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added 2 QC thresholds to ANI task to reduce false positives
Pytest Workflows #413: Pull request #168 synchronize by kapsakcj
August 24, 2023 16:22 19m 2s cjk-ani-threshold
August 24, 2023 16:22 19m 2s
added 2 QC thresholds to ANI task to reduce false positives
Pytest Workflows #412: Pull request #168 opened by kapsakcj
August 24, 2023 16:18 21m 48s cjk-ani-threshold
August 24, 2023 16:18 21m 48s
Output Dragonflye GFA & modify read screen in TheiaProk_ONT
Pytest Workflows #411: Pull request #165 synchronize by sage-wright
August 24, 2023 15:18 23m 2s smw-dragonflye-screen-dev
August 24, 2023 15:18 23m 2s
Deprecate the use of cg_pipeline for nanoplot stats
Pytest Workflows #410: Pull request #164 synchronize by cimendes
August 24, 2023 13:30 19m 32s im-theiaprok-ont
August 24, 2023 13:30 19m 32s
Output Dragonflye GFA & modify read screen in TheiaProk_ONT
Pytest Workflows #409: Pull request #165 opened by sage-wright
August 24, 2023 13:23 22m 13s smw-dragonflye-screen-dev
August 24, 2023 13:23 22m 13s
Deprecate the use of cg_pipeline for nanoplot stats
Pytest Workflows #408: Pull request #164 synchronize by cimendes
August 24, 2023 11:20 18m 57s im-theiaprok-ont
August 24, 2023 11:20 18m 57s
Deprecate the use of cg_pipeline for nanoplot stats
Pytest Workflows #407: Pull request #164 opened by cimendes
August 24, 2023 10:16 19m 31s im-theiaprok-ont
August 24, 2023 10:16 19m 31s
Continuing the reorganization of PHB
Pytest Workflows #406: Pull request #163 synchronize by sage-wright
August 23, 2023 17:06 29m 2s smw-reorganize-dev
August 23, 2023 17:06 29m 2s
Continuing the reorganization of PHB
Pytest Workflows #405: Pull request #163 opened by sage-wright
August 23, 2023 17:02 25m 59s smw-reorganize-dev
August 23, 2023 17:02 25m 59s
Skip extra headers in Concatenate_Column_Content
Pytest Workflows #404: Pull request #162 opened by sage-wright
August 23, 2023 16:54 21s smw-cat-column-dev
August 23, 2023 16:54 21s
CZGenEpi_Prep_PHB workflow
Pytest Workflows #403: Pull request #161 synchronize by sage-wright
August 23, 2023 16:31 15s smw-czgenepi-prep-dev
August 23, 2023 16:31 15s
CZGenEpi_Prep_PHB workflow
Pytest Workflows #402: Pull request #161 synchronize by sage-wright
August 23, 2023 16:29 18s smw-czgenepi-prep-dev
August 23, 2023 16:29 18s
CZGenEpi_Prep_PHB workflow
Pytest Workflows #401: Pull request #161 opened by sage-wright
August 23, 2023 16:28 13s smw-czgenepi-prep-dev
August 23, 2023 16:28 13s
CZGenEpi_Prep and other fun stuff
Pytest Workflows #400: Pull request #155 synchronize by sage-wright
August 23, 2023 16:09 20m 5s smw-czgenepi-dev
August 23, 2023 16:09 20m 5s
CDPH - TbProfiler parser implementation
Pytest Workflows #399: Pull request #97 synchronize by cimendes
August 23, 2023 15:09 19m 40s im-tbprofiler
August 23, 2023 15:09 19m 40s
CDPH - TbProfiler parser implementation
Pytest Workflows #398: Pull request #97 synchronize by sage-wright
August 23, 2023 14:15 18m 34s im-tbprofiler
August 23, 2023 14:15 18m 34s
CDPH - TbProfiler parser implementation
Pytest Workflows #397: Pull request #97 synchronize by cimendes
August 23, 2023 14:08 17m 45s im-tbprofiler
August 23, 2023 14:08 17m 45s
Resfinder improvements, added support for Shigella spp., added XDR Shigella prediction
Pytest Workflows #396: Pull request #159 synchronize by kapsakcj
August 23, 2023 13:57 20m 17s cjk-pointfinder
August 23, 2023 13:57 20m 17s
Merge pull request #148 from theiagen/smw-gisaid-dev
Pytest Workflows #395: Commit 2e854d1 pushed by kevinlibuit
August 23, 2023 13:15 19s main
August 23, 2023 13:15 19s
Merge pull request #150 from theiagen/cjk-sra-fetch-defaults
Pytest Workflows #394: Commit 4ee9b6d pushed by kevinlibuit
August 23, 2023 13:03 16s main
August 23, 2023 13:03 16s
CDPH - TbProfiler parser implementation
Pytest Workflows #393: Pull request #97 synchronize by cimendes
August 22, 2023 15:09 19m 51s im-tbprofiler
August 22, 2023 15:09 19m 51s
Resfinder improvements, added support for Shigella spp., added XDR Shigella prediction
Pytest Workflows #392: Pull request #159 opened by kapsakcj
August 21, 2023 19:37 17m 29s cjk-pointfinder
August 21, 2023 19:37 17m 29s
SRA_fetch workflow & fastq-dl task improvements
Pytest Workflows #391: Pull request #150 synchronize by kapsakcj
August 21, 2023 17:19 14s cjk-sra-fetch-defaults
August 21, 2023 17:19 14s
SRA_fetch workflow & fastq-dl task improvements
Pytest Workflows #390: Pull request #150 synchronize by kapsakcj
August 21, 2023 16:36 14s cjk-sra-fetch-defaults
August 21, 2023 16:36 14s
SRA_fetch workflow & fastq-dl task improvements
Pytest Workflows #389: Pull request #150 synchronize by kapsakcj
August 21, 2023 16:32 16s cjk-sra-fetch-defaults
August 21, 2023 16:32 16s
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