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Pull requests: theiagen/public_health_bioinformatics

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Pull requests list

Prevent Silent Errors
#666 opened Oct 31, 2024 by sage-wright • Draft
10 tasks
1
[TheiaCoV/TheiaProk/TheiaMeta/Freyja_FASTQ] fastq-scan updates & improvements. Adding JSON as wf output file
#662 opened Oct 28, 2024 by kapsakcj • Draft
10 tasks
2
3
[Mercury] bump mercury docker to 1.0.9: bugfix for GISAID metadata covv_coverage column
#661 opened Oct 25, 2024 by kapsakcj Loading…
6 of 10 tasks
2
3
[Dorado] New Dorado Basecalling Workflow Terra
#659 opened Oct 24, 2024 by fraser-combe Loading…
3 of 10 tasks
1
[Terra2NCBI] Force collection_date to be a string
#658 opened Oct 23, 2024 by cimendes • Draft
10 tasks
[New Workflow] Adding the TheiaMeta_Panel_Illumina_PE Workflow
#656 opened Oct 21, 2024 by sage-wright Loading…
4 of 10 tasks
1
[TheiaEuk] TheiaEuk ONT Workflow
#644 opened Oct 8, 2024 by Michal-Babins • Draft
10 tasks
1
1
[TheiaCov] wfs add percentage_mapped_reads
#641 opened Oct 3, 2024 by fraser-combe Loading…
4 of 10 tasks
1
15
[Kraken2] Split database from Kraken2 TheiaCoV task
#608 opened Sep 6, 2024 by jrotieno Loading…
4 of 10 tasks
3
32
Add Snippy_Variants QC outputs to Snippy_Tree and Snippy_Sreamline workflow outputs
#592 opened Aug 23, 2024 by jrotieno Loading…
7 of 10 tasks
1
12
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