--- re-building 'pseudobulk_transcriptomics.Rmd' using rmarkdown

processing vignette 'spatial_bioconductor_transcriptomics.Rmd' failed with diagnostics:

Vignette re-building failed.

Build process failed

Process completed with exit code 1.

--- re-building ‘pseudobulk_transcriptomics.Rmd’ using rmarkdown

processing vignette 'spatial_bioconductor_transcriptomics.Rmd' failed with diagnostics:

Vignette re-building failed.

Build process failed

Process completed with exit code 1.

Process completed with exit code 1.

[Workflow Telemetry] Unable to finish stat collector

[Workflow Telemetry] Error

Error: connect ECONNREFUSED 127.0.0.1:7777

[Workflow Telemetry] Unable to report stat collector result

[Workflow Telemetry] Error

Error: connect ECONNREFUSED 127.0.0.1:7777

dependencies 'BiocVersion', 'BiocStyle' are not available

No files were found with the provided path: check. No artifacts will be uploaded.

The following actions use a deprecated Node.js version and will be forced to run on node20: runforesight/workflow-telemetry-action@v1, actions/cache@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

harfbuzz 9.0.0 is already installed and up-to-date. To reinstall 9.0.0, run: brew reinstall harfbuzz

macOS's Gatekeeper has been disabled for this Cask

dependencies ‘BiocVersion’, ‘BiocStyle’ are not available

No files were found with the provided path: check. No artifacts will be uploaded.

The following actions use a deprecated Node.js version and will be forced to run on node20: runforesight/workflow-telemetry-action@v1, actions/cache@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

No files were found with the provided path: check. No artifacts will be uploaded.