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Removed all but bare-bones test requirements (will figure out minimal…
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… viable set of deps later)
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timbernat committed Dec 19, 2024
1 parent 77fe020 commit fe6b4a0
Showing 1 changed file with 1 addition and 42 deletions.
43 changes: 1 addition & 42 deletions devtools/conda-envs/test-env.yml
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name: test
channels:
- conda-forge
- openeye
dependencies:
# Basic Python dependencies
- python
- pip
- jupyterlab

# Testing and docs
# Unit testing
- pytest
- pytest-cov
- codecov
- sphinx

# Numerical libraries
- numpy
- pandas
- dgl >=1.0
- networkx
- anytree

# MD engines
- openmm
- lammps
- mdtraj
- pint # for units in case OpenFF is not installed

# Molecule building
- mbuild
- openbabel
- rdkit
- openeye-toolkits # TODO: consider making this optional?

# Visualization
- pillow
- matplotlib
- ipywidgets ==8.0.4 # more recent versions don't work with Jupyter notebooks, for some reason
- py3Dmol
- nglview ==3.0.6

# OpenFF stack
- openff-toolkit ~=0.16
- openff-interchange >=0.3.28
- openff-nagl >= 0.4
- openff-nagl-models >= 0.3

# Chemical database queries
- cirpy
- pubchempy
- pip:
- espaloma-charge ==0.0.8

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