workflow and config updates from aeon

.github/dependabot.yml

@@ -0,0 +1,34 @@
+version: 2
+updates:
+  # update GitHub actions versions
+  - package-ecosystem: github-actions
+    directory: /
+    schedule:
+      interval: weekly
+      time: "01:00"
+    commit-message:
+      prefix: "[MNT]"
+    labels:
+      - "maintenance"
+      - "no changelog"
+    groups:
+      github-actions:
+        patterns:
+          - "*"
+
+  # update Python dependencies
+  - package-ecosystem: pip
+    directory: /
+    schedule:
+      interval: weekly
+      time: "01:00"
+    commit-message:
+      prefix: "[MNT]"
+    labels:
+      - "maintenance"
+      - "full pytest actions"
+      - "no changelog"
+    groups:
+      python-packages:
+        patterns:
+          - "*"

.github/workflows/examples.yml

@@ -12,6 +12,10 @@ on:
       - "tsml_eval/**"
       - ".github/workflows/**"
       - "pyproject.toml"
+  schedule:
+    # every day at 1:30 AM UTC
+    - cron: "30 1 * * *"
+  workflow_dispatch:
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.head_ref || github.ref }}

.github/workflows/pre_commit.yml

@@ -7,6 +7,10 @@ on:
   pull_request:
     branches:
       - main
+  schedule:
+    # every day at 1:30 AM UTC
+    - cron: "30 1 * * *"
+  workflow_dispatch:
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.head_ref || github.ref }}
@@ -26,9 +30,18 @@ jobs:
       - uses: tj-actions/[email protected]
         id: changed-files
 
-      - uses: pre-commit/[email protected]
+      - if: ${{ github.event_name == 'pull_request' && contains(github.event.pull_request.labels.*.name, 'full pre-commit') }}
+        name: Full pre-commit
+        uses: pre-commit/[email protected]
+        with:
+          extra_args: --all-files
+      - if: ${{ github.event_name != 'pull_request' || !contains(github.event.pull_request.labels.*.name, 'full pre-commit') }}
+        name: Local pre-commit
+        uses: pre-commit/[email protected]
         with:
           extra_args: --files ${{ steps.changed-files.outputs.all_changed_files }}
 
-      - uses: pre-commit-ci/[email protected]
-        if: always()
+      - uses: marocchino/validate-dependabot@v2
+
+      - if: ${{ failure() && github.event_name == 'pull_request' && github.event.pull_request.draft == false }}
+        uses: pre-commit-ci/[email protected]

.github/workflows/precommit_autoupdate.yml

@@ -0,0 +1,37 @@
+name: Update pre-commit Hooks
+
+on:
+  schedule:
+    # every Monday at 12:30 AM UTC
+    - cron:  "30 0 * * 1"
+  workflow_dispatch:
+
+jobs:
+  pre-commit-auto-update:
+    runs-on: ubuntu-22.04
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - uses: actions/setup-python@v4
+        with:
+          python-version: "3.10"
+
+      - uses: browniebroke/[email protected]
+
+      - if: always()
+        uses: actions/create-github-app-token@v1
+        id: app-token
+        with:
+          app-id: ${{ vars.PR_APP_ID }}
+          private-key: ${{ secrets.PR_APP_KEY }}
+
+      - if: always()
+        uses: peter-evans/create-pull-request@v5
+        with:
+          token: ${{ steps.app-token.outputs.token }}
+          commit-message: "Automated `pre-commit` hook update"
+          branch: pre-commit-hooks-update
+          title: "[MNT] Automated `pre-commit` hook update"
+          body: "Automated weekly update to `.pre-commit-config.yaml` hook versions."
+          labels: maintenance, full pre-commit, no changelog

.github/workflows/release.yml

@@ -4,10 +4,11 @@ on:
   release:
     types:
       - published
+  workflow_dispatch:
 
 jobs:
   check_manifest:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
 
     steps:
       - uses: actions/checkout@v3
@@ -22,7 +23,7 @@ jobs:
 
   build_project:
     needs: check_manifest
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
 
     steps:
       - uses: actions/checkout@v3
@@ -41,6 +42,7 @@ jobs:
         with:
           name: dist
           path: dist/*
+          retention-days: 5
 
   test_wheels:
     needs: build_project
@@ -49,7 +51,7 @@ jobs:
 
     strategy:
       matrix:
-        os: [ ubuntu-latest, macOS-latest, windows-latest ]
+        os: [ ubuntu-22.04, macOS-12, windows-2022 ]
         python-version: [ "3.8", "3.9", "3.10", "3.11" ]
 
     steps:

.github/workflows/tests.yml

@@ -11,6 +11,10 @@ on:
       - "tsml_eval/**"
       - ".github/workflows/**"
       - "pyproject.toml"
+  schedule:
+    # every day at 1:30 AM UTC
+    - cron: "30 1 * * *"
+  workflow_dispatch:
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.head_ref || github.ref }}

pyproject.toml

@@ -10,8 +10,11 @@ authors = [
     {name = "Matthew Middlehurst", email = "[email protected]"},
     {name = "Tony Bagnall", email = "[email protected]"},
 ]
+maintainers = [
+    {name = "Matthew Middlehurst", email = "[email protected]"},
+    {name = "Tony Bagnall", email = "[email protected]"},
+]
 readme = "README.md"
-requires-python = ">=3.8,<3.12"
 keywords = [
     "data-science",
     "machine-learning",
@@ -36,6 +39,7 @@ classifiers = [
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
 ]
+requires-python = ">=3.8,<3.12"
 dependencies = [
     "aeon>=0.4.0,<0.5.0",
     "scikit-learn>=1.0.2,<=1.2.2",
@@ -58,6 +62,8 @@ unstable_extras = [
 deep_learning = [
     "aeon[dl]",
     "torch>=1.13.1",
+    # temp
+    "pycatch22<=0.4.3",
 ]
 dev = [
     "pre-commit",

sweep.yaml

@@ -1,6 +1,6 @@
 gha_enabled: True
 branch: "main"
-blocked_dirs: [".github/", "_tsml_group_experiments/", "results/", "tsml_eval/publications/"]
+blocked_dirs: [".github/", "results/"]
 draft: False
 description: "time-series-machine-learning/tsml-eval is a Python project for running experiments on time series machine learning algorithms and evaluating the results. Write code that adheres to PEP8 and is formatted to the Black code style. The projects documentation is built using Sphinx and MyST, and unit testing is done using pytest."
 
@@ -16,11 +16,9 @@ docs:
 
 sandbox:
   install:
-  - pre-commit install
+    - pre-commit install
   check:
-  - pre-commit run --files {file_path}
+    - git add . && pre-commit run --files {file_path} || exit 0
 
 rules:
-  - "Any clearly inefficient or redundant code can be optimized or refactored. Any improvements should not change the functionality of the code."
-  - "All public classes and functions except test functions should have a `numpydoc` style docstring. This should include a description of the class or function, the parameters, the class attributes or function return values, and a usage example for the class or function."
-  - "Update the relevant API page in `docs/api_reference/` when new public functions and classes are added and not included in the API documentation. For example, if a new function is added to `aeon/distances/`, a `sphinx.ext.autosummary` link should also be added to `docs/api_reference/distances.rst`. New sections in the page should not be created for individual functions and classes, add it to the most relevant existing one. Only add functions and classes which are not already in the relevant API page and avoid duplicate entries."
+  - ""