v1.3.1

Minor bug fixes

v1.3.0

Major changes, not backwards compatible with previous releases

• Replaced GA with TPE optimisation (hyperopt)
• Option for parallel replicate analysis, and model-averaging of them
• Refactored argument parsing, changed menu and options, switched to argparse

v1.2.3

• Fixed bug in univariate gridsearch

v1.2.2

Minor bugfixes:

• simResistnet creates incorrectly named outputs
• runResistnet failed when sample names were integers
• writing new geo database failed when using pickle network input
• bug in best param calculation for univariate gridsearch

v1.2.0

• A number of major and minor bug fixes
• Removed --posWeight and --allShapes options
• Added single-variable grid search optimisation as optional step
• added option for natural vs. full model averaging
• corrected error in model averaged weight/ effect size calculation
• fixed bug in best model tracking/ population update in the GA

v1.1.2

Merge branch 'master' of https://github.com/tkchafin/resistnet