Documentation and bookdown for dsSynthetic package to generate synthetic data in DataSHIELD.
https://tombisho.github.io/synthetic_bookdown/
dsSynthetic has a server-side package
https://github.com/tombisho/dsSynthetic
and a client side package
https://github.com/tombisho/dsSyntheticClient
The complete bookdown, tutorial, vignette with executable code and synthetic data is available here:
https://tombisho.github.io/synthetic_bookdown/
Please install R and R Studio
https://www.rstudio.com/products/rstudio/download/preview/
Install the following packages:
install.packages('devtools')
library(devtools)
devtools::install_github('tombisho/dsSyntheticClient')
devtools::install_github('datashield/[email protected]')
install.packages('rmarkdown')
install.packages('knitr')
install.packages('tinytex')
install.packages('metafor')
install.packages('DSOpal')
install.packages('DSI')
install.packages('opalr')
Follow the bookdown below for a complete tutorial:
https://tombisho.github.io/synthetic_bookdown/
See the bookdown below for a complete tutorial:
https://tombisho.github.io/synthetic_bookdown/
A minimal example of a book based on R Markdown and bookdown (https://github.com/rstudio/bookdown).
The bookdown can be compiled by typing the following commands:
library(bookdown)
bookdown::serve_book()
Tom R.P. Bishop and Soumya Banerjee
Bookdown recipe:
-
In RStudio, install the bookdown package -
Start a new project, but choose the project to be a book. -
In Github create an empty project (no README.md) with the same name as your book -
In RStudio go to Tools -> Project options -> Version control -> Git (it will ask you to reload the project) -
On Git command line, add the remote and push: git remote add origin https://github.com/USERNAME/PROJECT.git git push -u origin master
-
In the file _bookdown.yml, and the line output_dir: "docs" -
In the file _output.yml, delete the parts that refer to generating a pdf (I couldn’t get this to work):
bookdown::pdf_book: includes: in_header: preamble.tex latex_engine: xelatex citation_package: natbib keep_tex: yes bookdown::epub_book: default
-
Start to write your book! -
Check in local changes -
In Github go to Settings -> Pages and set the source to the main branch and folder to docs
-
Push your local changes to Github, hopefully it will build your site