This repository contains the files that generate Andy's Brain Book on ReadTheDocs.

Official AFNI source and documentation

Python code explaining how to display structural and functional fMRI data.

ASD diagnosis on ABIDE I

Standalone MATLAB implementation of permutation TFCE correction

fMRI Imaging Analysis

Generating and validating natural-language explanations.

Resting state HRF estimation from BOLD-fMRI signal

Improving autism identification with multisite data via site-dependence minimisation and second-order functional connectivity (TMI, 2022)

Multi-voxel pattern analyses methods based on ML & DL to decode the category of visual stimuli viewed by a human subject based on their recorded brain activity in fMRI form

MRI preprocessing and analysis pipelines and tools for the study of disorders of consciousness

Example pipeline for preprocessing, reading in behavioural files, first level and second level analysis

Causal Dynamic Network Modeling

These C/C++ source files consist of 150 classes, 300,000 lines of code, excluding a Qt-based user interface. Its functionality includes: GLM-statistics, hierarchical clustering, (non)-linear optimization, L1 and L2 norm minimization, Hungarian algorithm, EEG/MEG forward and inverse modelling, Boundary Element Method, spatio/temporal covariance m…

Analysis scripts and movie annotations for NNDb

A Matlab toolbox for examining the quality of structural (SNR) and functional (tSNR, SFNR) MRI

This is the repository for paper `Learning Task-Aware Effective Brain Connectivity for fMRI Analysis with Graph Neural Networks'.

A toolbox for NIfTI and Analyze medical image visualization, editing, and 3D rendering

[KHBM] Winter School 2022 - Neuroimage Data Analysis using Python and Graph Neural Networks

The NEXT fMRI analyisis workflow of xIA