MTXQCvX2 fluffy adventure is a quality and data processing tool for GC-MS based metabolomics experiments.

MS_targeted is an open-source command-line pipeline for statistical analysis of mass spectrometry metabolomics data.

R package for the estimation of metabolome-wide significance level and corresponding effective number of tests

R pipeline for the processing and analysis of Ionomics data

Package for automation of statistics that are widely used in metabolomics.

A Python package for metabolite enrichment analysis.

Time series study on Myopia in Mouse Model

Data cleaning and preparation of FRZB gene protein MS data

Easily install, load and update R packages for high-resolution metabolomics analyses

Composite Spectra Analysis

Workflow Project Templates for Metabolomics Analyses

R package that provide interactive graphical interface for metabolic profiling

Metabolome Annotation Workflow

The lingress project is to develop the pipeline to analyse the Nuclear magnetic resonance (NMR) dataset using a univariate linear regression model. This package contains the analysis with linear regression (OLS) and visualises the interpretation of the results with a p-value of all NMR peaks.

RTMet is a data workflow to process FIA-MS data coming from a bioreactor, find metabolites and fluxes, and send a feedback command to the system.

cookbook for MetMiner

Differential analysis of targeted Isotope-labeled Metabolomics data

Galaxy tools for metabolomics maintained by Workflow4Metabolomics

CoreMS is a comprehensive mass spectrometry software framework