Image segmentation - general superpixel segmentation & center detection & region growing

Segment Anything for Microscopy

nucleus/cell and histopathology image classification,detection,segmentation

Our solution for ICIAR 2018 Grand Challenge

Read and write Neuroglancer datasets programmatically.

Visualize, share and annotate your large 3D images online

A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.

Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.

Creating figures and animations for multi-channel images with a focus on microscopy.

Generative Adversarial Network for single image super-resolution in high content screening microscopy images

Particle tracking by solving linear assignment problem.

Utils and convenience functions for large-scale bio-image analysis.

Pure Python library for reading NIS Elements ND2 images and metadata

ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.

Distributed segmentation for bio-image-analysis

Label Free Prediction of Cell Painting from Brightfield Images

PiSCAT is a python-based package with a graphical user interface for performing high-performance analysis on a variety of iSCAT measurements.

Global Voxel Transformer Networks (GVTNets)

A Python library for easily calculating image-quality related features from images

CytoBrowser, a JavaScript and Node.js driven environment for fast and accessible collaborative online visualization, assessment, and annotation of very large microscopy images.