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After 48 hours my jobs keep timing out with no obvious error messages and no output files created. Here is my script that I use on the TACC Lonestar 5 server:
On Tue, Mar 17, 2020 at 5:16 PM kbeavers ***@***.***> wrote:
After 48 hours my jobs keep timing out with no obvious error messages and
no output files created. Here is my script that I use on the TACC Lonestar
5 server:
#!/bin/bash
#SBATCH -J pporthread4
#SBATCH -o pporthread4.o%j
#SBATCH -e pporthread4.e%j
#SBATCH -N 2
#SBATCH -n 32
#SBATCH -p largemem512GB
#SBATCH -t 48:00:00
Other commands must follow all #SBATCH directives...
module load intel/18.0.2
module load remora/1.8.2
module load TACC-largemem
module load bowtie/2.3.4
module load trinityrnaseq/2.8.4
run the executable named a.out
remora Trinity --normalize_reads --seqType fq --grid_node_CPU 32
--grid_node_max_memory 500G --max_memory 500G --SS_lib_type FR --left
UVI_120_F_paired.fq.gz,UVI_122_F_paired.fq.gz,UVI_124_F_paired.fq.gz
--right
UVI_120_R_paired.fq.gz,UVI_122_R_paired.fq.gz,UVI_124_R_paired.fq.gz --CPU
32
The only error I get is:
"Host key verification failed."
I have no idea what's going on here. Can someone lead me in the right
direction?
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After 48 hours my jobs keep timing out with no obvious error messages and no output files created. Here is my script that I use on the TACC Lonestar 5 server:
#!/bin/bash
#SBATCH -J pporthread4
#SBATCH -o pporthread4.o%j
#SBATCH -e pporthread4.e%j
#SBATCH -N 2
#SBATCH -n 32
#SBATCH -p largemem512GB
#SBATCH -t 48:00:00
Other commands must follow all #SBATCH directives...
module load intel/18.0.2
module load remora/1.8.2
module load TACC-largemem
module load bowtie/2.3.4
module load trinityrnaseq/2.8.4
run the executable named a.out
remora Trinity --normalize_reads --seqType fq --grid_node_CPU 32 --grid_node_max_memory 500G --max_memory 500G --SS_lib_type FR --left UVI_120_F_paired.fq.gz,UVI_122_F_paired.fq.gz,UVI_124_F_paired.fq.gz --right UVI_120_R_paired.fq.gz,UVI_122_R_paired.fq.gz,UVI_124_R_paired.fq.gz --CPU 32
The only error I get is:
"Host key verification failed."
I have no idea what's going on here. Can someone lead me in the right direction?
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