Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Better timeslices #233

Open
wants to merge 1 commit into
base: main
Choose a base branch
from
Open

Better timeslices #233

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
6 changes: 4 additions & 2 deletions tsdate/prior.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -890,8 +890,10 @@ def create_timepoints(base_priors, n_points=21):
# missing samples, otherwise we only have one set of priors anyway
prior_params = base_priors.prior_with_max_total_tips()
# Percentages - current day samples should be at time 0, so we omit this
# We can't include the top end point, as this leads to NaNs
percentiles = np.linspace(0, 1, n_points + 1)[1:-1]
# We can't include 1 at the top end as it will be at infinite time
# so we take the upper time point to be a fraction lower than 1 (as if we divided
# the last timeslice into n_points evenly picked quantiles and removed the last one)
percentiles = np.linspace(0, 1 - 1 / (n_points**2), n_points)[1:]
# percentiles = np.append(percentiles, 0.999999)
param_cols = np.where([f not in ("mean", "var") for f in PriorParams._fields])[0]
"""
Expand Down