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285 Open 901 Closed
285 Open 901 Closed
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Issues list

provide feedback on max_iter for extend_haplotypes
#2988 opened Sep 17, 2024 by petrelharp
1
"mutation" mode for statistics
#2982 opened Sep 6, 2024 by petrelharp
1
set default for genetic_relatedness to polarised=True and remove a factor of 1/2
#2981 opened Aug 30, 2024 by petrelharp
clarify that genetic_relatedness includes self comparisons
#2978 opened Aug 28, 2024 by petrelharp
1
Trivial wording change
#2977 opened Aug 17, 2024 by hyanwong
1
Drop "benchmark" CI job? Infrastructure and tools Development infrastructure and tools
#2965 opened Jun 20, 2024 by jeromekelleher
Split large numbers in html/cli print out.
#2951 opened May 20, 2024 by benjeffery
Codecov upload issues
#2931 opened Apr 17, 2024 by benjeffery
1
Bug assertion in ts.allele_frequency_spectrum bug Something isn't working
#2923 opened Apr 11, 2024 by nspope
8
TreeSequence.f2 is not symmetric with multiallelic sites
#2919 opened Apr 5, 2024 by BenjaminPeter
3
Add node_is_sample array enhancement New feature or request Python API Issue is about the Python API
#2917 opened Apr 4, 2024 by jeromekelleher
2
Use reusable workflows across repos? Infrastructure and tools Development infrastructure and tools
#2913 opened Mar 24, 2024 by jeromekelleher
2
AFS folding (polarised=False)
#2972 opened Mar 9, 2024 by sunyatin
6
Simpler, more efficient interface for pair coalescence rates enhancement New feature or request
#2904 opened Feb 11, 2024 by nspope
6
Number of variable sites (not just num_sites)
#2899 opened Feb 7, 2024 by hyanwong
1
write_vcf should use the reference sequence for REF, if present
#2898 opened Feb 7, 2024 by hyanwong Python 0.5.10
Documentation for IBD segments documentation Documentation
#2897 opened Feb 1, 2024 by jeromekelleher
Add support for MRCA based IBD enhancement New feature or request
#2896 opened Feb 1, 2024 by jeromekelleher
@jeromekelleher
2
C API for numpy 2.0 C API Issue is about the C API Infrastructure and tools Development infrastructure and tools
#2893 opened Jan 23, 2024 by jeromekelleher Python 0.5.10
4
More flexible interpretation of mutation rate when getting emission probability when using _tskit.lshmm
#2891 opened Jan 17, 2024 by szhan
4
Document divergence_matrix documentation Documentation
#2890 opened Jan 16, 2024 by jeromekelleher Python 0.5.10
Document genetic_relatedness_matrix documentation Documentation
#2889 opened Jan 16, 2024 by jeromekelleher Python 0.5.10
extend edges misses some extendable edges
#2884 opened Jan 9, 2024 by petrelharp
Can I get a list of descendants of a branch (edge)?
#2882 opened Dec 19, 2023 by hanbin973
11
“Edit on GitHub” link missing from tskit docs
#2881 opened Dec 15, 2023 by TymekPieszko
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