Revert "update kallistobustools count output list" (nf-core#5307)

Revert "update kallistobustools count output list (nf-core#5110)" This reverts commit 9d3e489.
tucano · Mar 20, 2024 · 73ba108 · 73ba108
1 parent f20e80d
commit 73ba108
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Showing 3 changed files with 5 additions and 41 deletions.
diff --git a/modules/nf-core/kallistobustools/count/main.nf b/modules/nf-core/kallistobustools/count/main.nf
@@ -17,11 +17,9 @@ process KALLISTOBUSTOOLS_COUNT {
     val   workflow_mode
 
     output:
-    tuple val(meta), path ("*.count")                  , emit: count
-    tuple val(meta), path ("*.count/counts_unfiltered"), emit: raw_counts
-    tuple val(meta), path ("*.count/counts_filtered")  , emit: filtered_counts, optional: true
-    path "versions.yml"                                , emit: versions
-    path "*.count/*/*.mtx"                             , emit: matrix //Ensure that kallisto finished and produced outputs
+    tuple val(meta), path ("*.count")   , emit: count
+    path "versions.yml"                 , emit: versions
+    path "*.count/*/*.mtx"              , emit: matrix //Ensure that kallisto finished and produced outputs
 
     when:
     task.ext.when == null || task.ext.when

diff --git a/modules/nf-core/kallistobustools/count/meta.yml b/modules/nf-core/kallistobustools/count/meta.yml
@@ -58,14 +58,6 @@ output:
       type: file
       description: kb count output folder
       pattern: "*.{count}"
-  - raw_counts:
-      type: file
-      description: kb raw counts output folder
-      pattern: "*.{count}/counts_unfiltered"
-  - filtered_counts:
-      type: file
-      description: kb filtered counts output folder
-      pattern: "*.{count}/counts_filtered"
   - versions:
       type: file
       description: File containing software versions

diff --git a/modules/nf-core/kallistobustools/count/tests/main.nf.test.snap b/modules/nf-core/kallistobustools/count/tests/main.nf.test.snap