A snakemake pipeline for generation of metagenome assembled genomes (MAGs) and full length tutorial on implementation. Used here to generate MAGs for the microbial community of Sanguina nivaloides. This Snakemake pipeline was adapted from EukHeist.
Open a terminal and log on to the University of Memphis High Performance Computing (HPC) cluster. Documentation for U of M can be found here. Ensure that you are on campus or running the Cisco AnyConnect Secure Mobility Client.
Enter the following into the terminal:
ssh [University UID]@hpclogin.memphis.edu
And enter your pasword after being prompted:
[University UID]@hpclogin.memphis.edu's password:
Install miniconda to create
Create a conda environment
`cookiecutter https://github.com/Snakemake-Profiles/slurm.git