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Bug fixes for Jet (#981) #515

Bug fixes for Jet (#981)

Bug fixes for Jet (#981) #515

Workflow file for this run

name: Intel Linux Build and Test
on: [push, pull_request, workflow_dispatch]
# Use custom shell with -l so .bash_profile is sourced which loads intel/oneapi/setvars.sh
# without having to do it in manually every step
defaults:
run:
shell: bash -leo pipefail {0}
# Set I_MPI_CC/F90 so Intel MPI wrapper uses icc/ifort instead of gcc/gfortran
env:
cache_key: intel
CC: icc
FC: ifort
CXX: icpc
I_MPI_CC: icc
I_MPI_F90: ifort
# The jobs are split into:
# 1. a dependency build step (setup), and
# 2. a UFS-utils build and test step (ufs_utils)
# The setup is run once and the environment is cached,
# so each subsequent build and test of UFS-utils can reuse the cached
# dependencies to save time (and compute).
jobs:
setup:
runs-on: ubuntu-20.04
steps:
- name: checkout # this is to get the ci/spack.yaml file
uses: actions/checkout@v3
with:
path: ufs_utils
# Cache spack, compiler and dependencies
- name: cache-env
id: cache-env
uses: actions/cache@v3
with:
path: |
spack
~/.spack
/opt/intel
key: spack-${{ runner.os }}-${{ env.cache_key }}-${{ hashFiles('ufs_utils/ci/spack.yaml') }}
- name: install-intel-compilers
run: |
wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB
sudo apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB
echo "deb https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list
sudo apt-get update
sudo apt-get install intel-oneapi-dev-utilities intel-oneapi-mpi-devel intel-oneapi-openmp intel-oneapi-compiler-fortran-2023.2.1 intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-2023.2.1
echo "source /opt/intel/oneapi/setvars.sh" >> ~/.bash_profile
# Install dependencies using Spack
- name: install-dependencies-with-spack
if: steps.cache-env.outputs.cache-hit != 'true'
run: |
git clone -c feature.manyFiles=true https://github.com/JCSDA/spack.git
source spack/share/spack/setup-env.sh
sed "s/\[intel, gcc@10:10, apple-clang@14\]/\[intel\]/g" ufs_utils/ci/spack.yaml > spack_ci.yaml
spack env create ufs_utils-env spack_ci.yaml
spack env activate ufs_utils-env
spack compiler find
sudo apt install cmake
spack external find
spack add intel-oneapi-mpi
spack concretize
spack install --dirty -v --fail-fast
spack clean --all
ufs_utils:
needs: setup
runs-on: ubuntu-20.04
steps:
- name: install-intel
run: |
echo "source /opt/intel/oneapi/setvars.sh" >> ~/.bash_profile
- name: checkout
uses: actions/checkout@v3
with:
path: ufs_utils
submodules: recursive
- name: cache-env
id: cache-env
uses: actions/cache@v3
with:
path: |
spack
~/.spack
/opt/intel
key: spack-${{ runner.os }}-${{ env.cache_key }}-${{ hashFiles('ufs_utils/ci/spack.yaml') }}
- name: build
run: |
source spack/share/spack/setup-env.sh
spack env activate ufs_utils-env
export CC=mpiicc
export FC=mpiifort
cd ufs_utils
mkdir -p build && cd build
cmake -DCMAKE_INSTALL_PREFIX=../install ..
make -j2 VERBOSE=1
make install
- name: ctest
run: |
source spack/share/spack/setup-env.sh
spack env activate ufs_utils-env
cd ufs_utils
cd build
ctest --verbose --rerun-failed --output-on-failure