Add DOI info to CITATION.cff for v2.5.0 #140
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| --- | |
| name: PROCESS main/develop testing | |
| on: | |
| pull_request: | |
| push: | |
| permissions: | |
| contents: read | |
| pages: write | |
| id-token: write | |
| jobs: | |
| docker: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Check for changed files affecting the container | |
| uses: dorny/paths-filter@v2 | |
| id: changes | |
| with: | |
| filters: | | |
| build_container: | |
| - 'docker/ci/Dockerfile' | |
| - 'requirements.txt' | |
| - 'requirements_dev.txt' | |
| - name: Login to GitHub Container Registry | |
| if: steps.changes.outputs.build_container == 'true' && github.ref == 'refs/heads/main' | |
| uses: docker/login-action@v1 | |
| with: | |
| registry: ghcr.io | |
| username: timothy-nunn | |
| password: ${{ secrets.PROCESS_CI_PAT }} | |
| - name: Build the PROCESS Docker image | |
| if: steps.changes.outputs.build_container == 'true' && github.ref == 'refs/heads/main' | |
| run: | | |
| cp requirements.txt docker/ci/ | |
| cp requirements_dev.txt docker/ci/ | |
| cd docker/ci | |
| docker build . -t ghcr.io/ukaea/process-ci:latest | |
| docker push ghcr.io/ukaea/process-ci:latest | |
| make-py38: | |
| runs-on: ubuntu-latest | |
| needs: docker | |
| container: | |
| image: ghcr.io/ukaea/process-ci:latest | |
| credentials: | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Build PROCESS | |
| run: | | |
| git config --global --add safe.directory '*' | |
| cmake -S. -Bbuild | |
| cmake --build build | |
| - name: Archive build artifacts in process | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: process-build-artifacts | |
| path: | | |
| process/**/*.so | |
| process/io/python_fortran_dicts.json | |
| - name: Archive coverage data | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage-artifacts | |
| path: | | |
| build/CMakeFiles/process.dir/source/fortran/*.gcno | |
| lcov_results | |
| - name: Archive ford artifacts | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ford-artifact | |
| path: build/ford_project.pickle | |
| unit-py38: | |
| runs-on: ubuntu-latest | |
| needs: make-py38 | |
| container: | |
| image: ghcr.io/ukaea/process-ci:latest | |
| credentials: | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Download build artifacts | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: process-build-artifacts | |
| path: process/ | |
| - name: Install PROCESS | |
| run: pip install . | |
| - name: Run unit tests | |
| run: pytest --cov=process tests/unit -v | |
| - name: Archive unit test coverage data | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: unit-coverage-artifacts | |
| path: .coverage | |
| # integration-py38: | |
| # runs-on: ubuntu-latest | |
| # needs: make-py38 | |
| # container: | |
| # image: ghcr.io/ukaea/process-ci:latest | |
| # credentials: | |
| # username: ${{ github.actor }} | |
| # password: ${{ secrets.GITHUB_TOKEN }} | |
| # steps: | |
| # - uses: actions/checkout@v3 | |
| # - name: Download build artifacts | |
| # uses: actions/download-artifact@v3 | |
| # with: | |
| # name: process-build-artifacts | |
| # path: process/ | |
| # - name: Install PROCESS | |
| # run: pip install . | |
| # - name: Run integration tests | |
| # run: pytest tests/integration/ -n auto -v | |
| regression-py38: | |
| runs-on: ubuntu-latest | |
| needs: make-py38 | |
| continue-on-error: true | |
| container: | |
| image: ghcr.io/ukaea/process-ci:latest | |
| credentials: | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Download build artifacts | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: process-build-artifacts | |
| path: process/ | |
| - name: Install PROCESS | |
| run: pip install . | |
| - name: Run regression tests | |
| run: pytest tests/regression -v --reg-tolerance=0 | |
| regression-5-percent-py38: | |
| runs-on: ubuntu-latest | |
| needs: make-py38 | |
| continue-on-error: true | |
| container: | |
| image: ghcr.io/ukaea/process-ci:latest | |
| credentials: | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Download build artifacts | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: process-build-artifacts | |
| path: process/ | |
| - name: Install PROCESS | |
| run: pip install . | |
| - name: Run regression tests | |
| run: pytest tests/regression | |
| large-tokamak-py38: | |
| runs-on: ubuntu-latest | |
| needs: make-py38 | |
| container: | |
| image: ghcr.io/ukaea/process-ci:latest | |
| credentials: | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| if: github.ref == 'refs/heads/main' | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Download build artifacts | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: process-build-artifacts | |
| path: process/ | |
| - name: Install PROCESS | |
| run: pip install . | |
| - name: Run large tokamak | |
| run: | | |
| process -i tests/regression/scenarios/large-tokamak/IN.DAT | |
| mv tests/regression/scenarios/large-tokamak/MFILE.DAT tracking/large_tokamak_MFILE.DAT | |
| - name: Archive large-tokamak MFILE | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: large-tokamak-mfile | |
| path: tracking/large_tokamak_MFILE.DAT | |
| flake8: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ghcr.io/ukaea/process-ci:latest | |
| credentials: | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Run Flake8 linter | |
| run: python -m flake8 --tee . | |
| black: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ghcr.io/ukaea/process-ci:latest | |
| credentials: | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Run Black | |
| run: python -m black --check . | |
| tracking: | |
| concurrency: | |
| group: tracking-jobs | |
| cancel-in-progress: false | |
| runs-on: ubuntu-latest | |
| needs: large-tokamak-py38 | |
| if: github.ref == 'refs/heads/main' | |
| container: | |
| image: ghcr.io/ukaea/process-ci:latest | |
| credentials: | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Download build artifacts | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: process-build-artifacts | |
| path: process/ | |
| - name: Install PROCESS | |
| run: pip install . | |
| - name: Setup SSH identity | |
| uses: webfactory/[email protected] | |
| with: | |
| ssh-private-key: ${{ secrets.SSH_PRIVATE_KEY }} | |
| - name: Download tracking data | |
| run: git clone [email protected]:timothy-nunn/process-tracking-data.git process-tracking-data | |
| - name: Download large tokamak MFILE | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: large-tokamak-mfile | |
| path: tracking/ | |
| - name: Create new tracking entries | |
| run: | | |
| git config --global --add safe.directory '*' | |
| python tracking/tracking_data.py track process-tracking-data --mfile tracking/large_tokamak_MFILE.DAT --hash ${{ github.sha }} --commit '${{ github.event.head_commit.message }}' | |
| cp tracking/large_tokamak_MFILE.DAT process-tracking-data/large_tokamak_MFILE_$(git rev-parse HEAD).DAT | |
| - name: Create the tracking dashboard | |
| run: python tracking/tracking_data.py plot process-tracking-data --out tracking.html | |
| - name: Archive tracking dashboard | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: tracking-html | |
| path: tracking.html | |
| - name: Setup Git identity | |
| run: | | |
| git config --global user.email "${{ github.triggering_actor }}@github.runner" | |
| git config --global user.name "${{ github.job }}" | |
| - name: Commit and push tracking data | |
| run: | | |
| cd process-tracking-data | |
| git add . | |
| git commit -m "${{ github.run_id }}-${{ github.run_number }}-${{ github.run_attempt }}" | |
| git push | |
| docs: | |
| concurrency: | |
| group: docs-jobs | |
| cancel-in-progress: false | |
| runs-on: ubuntu-latest | |
| needs: tracking | |
| if: github.ref == 'refs/heads/main' | |
| container: | |
| image: ghcr.io/ukaea/process-ci:latest | |
| credentials: | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Download build artifacts | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: process-build-artifacts | |
| path: process/ | |
| - name: Install PROCESS | |
| run: pip install -e . | |
| - run: ford documentation/ford/index.md | |
| - name: Download ford project | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: ford-artifact | |
| path: build/ | |
| - run: python scripts/document_fortran_interface.py | |
| - run: python scripts/vardes.py | |
| - run: git config --global --add safe.directory '*' | |
| - run: mkdocs build | |
| - run: mv ford_site site | |
| - name: Download tracking html | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: tracking-html | |
| - run: mv tracking.html site || cp site/404.html site/tracking.html | |
| - name: Upload documentation page | |
| uses: actions/upload-pages-artifact@v1 | |
| with: | |
| path: site/ | |
| - name: Deploy GitHub pages | |
| id: deployment | |
| uses: actions/deploy-pages@v2 |