cargo fmt + clippy

fa-compression/benches/algorithm1/decode.rs

@@ -3,6 +3,7 @@ use fa_compression::algorithm1::{
     decode,
     encode
 };
+
 use super::util::generate_annotation;
 
 /// Generate a random number of encoded annotations.

fa-compression/benches/algorithm1/encode.rs

@@ -1,5 +1,6 @@
 use criterion::black_box;
 use fa_compression::algorithm1::encode;
+
 use super::util::generate_annotation;
 
 /// Generate a random number of decoded annotations.

fa-compression/benches/algorithm1/mod.rs

@@ -2,7 +2,7 @@ use criterion::criterion_group;
 
 use super::util;
 
-mod encode;
 mod decode;
+mod encode;
 
 criterion_group!(benches, encode::encode_benchmark, decode::decode_benchmark);

fa-compression/benches/algorithm2/decode.rs

@@ -1,9 +1,10 @@
 use criterion::black_box;
 use fa_compression::algorithm2::{
     decode,
-    encode, 
+    encode,
     CompressionTable
 };
+
 use super::util::generate_annotation;
 
 fn generate_encoded_annotations_and_table(count: usize) -> (Vec<u8>, CompressionTable) {

fa-compression/benches/algorithm2/encode.rs

@@ -1,7 +1,9 @@
 use criterion::black_box;
 use fa_compression::algorithm2::{
-    encode, CompressionTable
+    encode,
+    CompressionTable
 };
+
 use super::util::generate_annotation;
 
 fn generate_decoded_annotations_and_table(count: usize) -> (String, CompressionTable) {

fa-compression/benches/algorithm2/mod.rs

@@ -2,7 +2,7 @@ use criterion::criterion_group;
 
 use super::util;
 
-mod encode;
 mod decode;
+mod encode;
 
 criterion_group!(benches, encode::encode_benchmark, decode::decode_benchmark);

fa-compression/benches/bench_main.rs

@@ -1,7 +1,7 @@
 use criterion::criterion_main;
 
-mod util;
 mod algorithm1;
 mod algorithm2;
+mod util;
 
 criterion_main!(algorithm1::benches, algorithm2::benches);

fa-compression/src/algorithm1/decode.rs

@@ -1,7 +1,10 @@
 //! This module provides a function to decode a byte array into a string representation of
 //! annotations.
 
-use super::{CharacterSet, Decode};
+use super::{
+    CharacterSet,
+    Decode
+};
 
 /// The prefixes for the different types of annotations.
 static PREFIXES: [&str; 3] = ["EC:", "GO:", "IPR:IPR"];

fa-compression/src/algorithm2/decode.rs

@@ -7,7 +7,7 @@ pub fn decode(input: &[u8], compression_table: CompressionTable) -> String {
 
     let mut result = String::with_capacity(input.len() / 3 * 15);
     for bytes in input.chunks_exact(3) {
-        let index = u32::from_le_bytes([ bytes[0], bytes[1], bytes[2], 0 ]) as usize;
+        let index = u32::from_le_bytes([bytes[0], bytes[1], bytes[2], 0]) as usize;
         result.push_str(&compression_table[index].annotation);
         result.push(';');
     }

fa-compression/src/algorithm2/encode.rs

@@ -9,7 +9,7 @@ pub fn encode(input: &str, compression_table: CompressionTable) -> Vec<u8> {
 
     for annotation in input.split(';') {
         if let Some(index) = compression_table.index_of(annotation) {
-            encoded.extend_from_slice(&index.to_le_bytes()[0..3])
+            encoded.extend_from_slice(&index.to_le_bytes()[0 .. 3])
         }
     }
 
@@ -64,6 +64,9 @@ mod tests {
     #[test]
     fn test_encode_all() {
         let table = create_compresion_table();
-        assert_eq!(encode("IPR:IPR000001;EC:1.1.1.-;IPR:IPR000003;GO:0000002", table), vec![ 0, 0, 0, 7, 0, 0, 2, 0, 0, 5, 0, 0 ])
+        assert_eq!(
+            encode("IPR:IPR000001;EC:1.1.1.-;IPR:IPR000003;GO:0000002", table),
+            vec![0, 0, 0, 7, 0, 0, 2, 0, 0, 5, 0, 0]
+        )
     }
 }

fa-compression/src/algorithm2/mod.rs

@@ -1,17 +1,17 @@
-mod encode;
 mod decode;
+mod encode;
 
 use std::ops::Index;
 
-pub use encode::encode;
 pub use decode::decode;
+pub use encode::encode;
 
 pub struct CompressionTableEntry {
     pub annotation: String
 }
 
 pub struct CompressionTable {
-    pub entries: Vec<CompressionTableEntry>,
+    pub entries: Vec<CompressionTableEntry>
 }
 
 impl CompressionTable {
@@ -28,7 +28,15 @@ impl CompressionTable {
     }
 
     pub fn index_of(&self, annotation: &str) -> Option<usize> {
-        self.entries.iter().position(|entry| entry.annotation == annotation)
+        self.entries
+            .iter()
+            .position(|entry| entry.annotation == annotation)
+    }
+}
+
+impl Default for CompressionTable {
+    fn default() -> Self {
+        Self::new()
     }
 }