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Compress protein text using bit packing (from 8 bits per char to 5 bits) #26

Merged
merged 13 commits into from
Sep 19, 2024
Merged

Compress protein text using bit packing (from 8 bits per char to 5 bits) #26

merged 13 commits into from
Sep 19, 2024

Commits on Sep 11, 2024

  1. Represent chars in protein text with 5 bits, tests don't work yet

    @SimonVandeVyver
    SimonVandeVyver committed Sep 11, 2024
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  2. fix tests to only use characters of peptide alphabet

    @SimonVandeVyver
    SimonVandeVyver committed Sep 11, 2024
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  3. use uncompressed text for SA construction

    @SimonVandeVyver
    SimonVandeVyver committed Sep 11, 2024
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  4. add tests for text-compression

    @SimonVandeVyver
    SimonVandeVyver committed Sep 11, 2024
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  5. Add documentation to text compression

    @SimonVandeVyver
    SimonVandeVyver committed Sep 11, 2024
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Commits on Sep 12, 2024

  1. remove trailing space

    @SimonVandeVyver
    SimonVandeVyver committed Sep 12, 2024
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  2. cargo fmt to format code

    @SimonVandeVyver
    SimonVandeVyver committed Sep 12, 2024
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  3. cargo fmt to format code

    @SimonVandeVyver
    SimonVandeVyver committed Sep 12, 2024
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  4. fix cargo clippy errors

    @SimonVandeVyver
    SimonVandeVyver committed Sep 12, 2024
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  5. reformat with cargo

    @SimonVandeVyver
    SimonVandeVyver committed Sep 12, 2024
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  6. fix to long doc comment

    @SimonVandeVyver
    SimonVandeVyver committed Sep 12, 2024
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  7. reformat with cargo

    @SimonVandeVyver
    SimonVandeVyver committed Sep 12, 2024
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  8. add lifetime parameter to ProteinTextSlice

    @SimonVandeVyver
    SimonVandeVyver committed Sep 12, 2024
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