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Dorado basecaller #112

Merged
merged 45 commits into from
Jun 25, 2024
Merged

Dorado basecaller #112

merged 45 commits into from
Jun 25, 2024

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TomHarrop
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@TomHarrop TomHarrop commented Jun 4, 2024

Adding Oxford Nanopore's dorado basecaller and a tool for converting fast5 to pod5.

Dorado runs on GPU. I've tested the wrapper with Singularity / Apptainer.

Dorado has been requested on tools-iuc but possibly not suitable due to license, so planning to host the wrapper here for now.

@TomHarrop TomHarrop marked this pull request as draft June 4, 2024 23:52
@TomHarrop TomHarrop marked this pull request as ready for review June 18, 2024 04:27
@TomHarrop TomHarrop changed the title Draft/WIP Dorado basecaller Dorado basecaller Jun 18, 2024
@TomHarrop TomHarrop merged commit 8c6af15 into usegalaxy-au:master Jun 25, 2024
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@TomHarrop TomHarrop deleted the dorado branch June 25, 2024 02:49
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