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Update fgenesh_annotate.xml #113

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Jun 14, 2024
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Update fgenesh_annotate.xml #113

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10 changes: 5 additions & 5 deletions tools/fgenesh/fgenesh_annotate.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -119,8 +119,8 @@ INTRONIC_GENES = ${intronic_genes}
<inputs>
<conditional name="inputs">
<param name="input_type" type="select" label="Input type" help="Select single sequence or collection of sequence">
<option value="single" selected="true">Single sequence</option>
<option value="multiple">Multiple sequences</option>
<option value="single" selected="true">assembled genome, in a single contig</option>
<option value="multiple">assembled genome, in multiple contigs</option>
</param>
<when value="single">
<param name="single_seq" format="fasta" type="data" label="Single sequence" help="Single sequence" multiple="true"/>
Expand All @@ -131,9 +131,9 @@ INTRONIC_GENES = ${intronic_genes}
</conditional>
<conditional name="repeat_sequence">
<param name="selector" type="select" label="Use repeat masking sequence" help="Enable this option if you want to use repeat masked sequences .">
<option value="no_repeat_seq" selected="true">No repeat sequence</option>
<option value="single_masked_seq">Single masked sequence</option>
<option value="multiple_masked_seq">Multiple masked sequences</option>
<option value="no_repeat_seq" selected="true">No repeat-masked genome</option>
<option value="single_masked_seq">Repeat-masked genome in a single contig</option>
<option value="multiple_masked_seq">Repeat-masked genome in multiple contigs</option>
</param>
<when value="single_masked_seq">
<param name="masked_seq_single" format="fasta" type="data" label="repeat masked sequence" help="Single masked sequence" multiple="true"/>
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