Skip to content

Commit

Permalink
Jenkins update build 166.
Browse files Browse the repository at this point in the history
  • Loading branch information
@galaxy-au-tools-jenkins-bot
galaxy-au-tools-jenkins-bot committed Oct 4, 2023
1 parent 5712657 commit 2e01327
Show file tree
Hide file tree
Showing 94 changed files with 2,157 additions and 2,068 deletions.
54 changes: 54 additions & 0 deletions automated_tool_installation_log.tsv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -5701,3 +5701,57 @@ Update 165 27/09/23 16:06:22 trinity False Installed iuc 8f1c3df4dd49 8f1c3df4dd
Update 165 27/09/23 16:07:15 trinity_abundance_estimates_to_matrix False Installed iuc ba3720d7e68b ba3720d7e68b RNA-seq toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_165/install_log.txt
Update 165 27/09/23 16:08:03 trinity_align_and_estimate_abundance False Installed iuc 2fb4ee002432 2fb4ee002432 RNA-seq toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_165/install_log.txt
Update 165 27/09/23 16:08:52 trinity_analyze_diff_expr False Installed iuc 9ff3765e7172 9ff3765e7172 RNA-seq toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_165/install_log.txt
Update 166 04/10/23 11:40:36 add_value False Installed devteam 023f0a3760b3 023f0a3760b3 1/1 1/1 Text Manipulation toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 11:45:28 alphafold2 False Tests failed galaxy-australia e4a053d67e24 e4a053d67e24 Staging Testing 0/4 Proteomic AI toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 11:54:23 bwa_mem2 False Tests failed iuc bfaa0d22c2e4 bfaa0d22c2e4 Staging Testing 6/7 Mapping toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 11:58:26 cat_bins False Tests failed iuc 31853794ace2 31853794ace2 Staging Testing 0/4 Metagenomic Analysis toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 12:09:48 chipseeker False Tests failed rnateam 8bd92f2404dd 8bd92f2404dd Staging Testing 0/6 Annotation toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 12:16:22 dada2_assigntaxonomyaddspecies False Tests failed iuc 7c2100246a2f 7c2100246a2f Staging Testing 2/3 Metagenomic Analysis toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 13:24:48 deeptools_bam_compare False Installed bgruening c929a006727f c929a006727f 2/2 2/2 DeepTools toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 14:01:53 deeptools_bam_coverage False Installed bgruening 0e49b109abc2 0e49b109abc2 7/7 7/7 DeepTools toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 14:17:06 deeptools_bam_pe_fragmentsize False Installed bgruening c06951d10364 c06951d10364 2/2 2/2 DeepTools toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 14:37:34 deeptools_bigwig_compare False Installed bgruening 07418a30ed01 07418a30ed01 2/2 2/2 DeepTools toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 14:41:41 deeptools_compute_gc_bias False Tests failed bgruening 26983857c91a 26983857c91a Staging Testing 0/1 DeepTools toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 14:47:36 deeptools_compute_matrix False Shed-tools error bgruening a60c359ec43c a60c359ec43c Production Installation 3/3 DeepTools toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 14:57:22 deeptools_compute_matrix_operations False Tests failed bgruening e6d0bff01239 e6d0bff01239 Production Testing 2/2 0/2 DeepTools toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 15:05:04 deeptools_correct_gc_bias False Installed bgruening e479c7ca5570 e479c7ca5570 1/1 1/1 DeepTools toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 15:27:13 deeptools_multi_bam_summary False Installed bgruening 01fb6a7654e6 01fb6a7654e6 2/2 2/2 DeepTools toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 15:39:15 deeptools_multi_bigwig_summary False Installed bgruening 137c4beed34b 137c4beed34b 2/2 2/2 DeepTools toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 15:44:13 deeptools_plot_correlation False Tests failed bgruening bad3ca889618 bad3ca889618 Staging Testing 1/2 DeepTools toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 15:53:34 deeptools_plot_coverage False Installed bgruening 231994413f89 231994413f89 2/2 2/2 DeepTools toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 16:03:13 deeptools_plot_enrichment False Installed bgruening 4431f39ede55 4431f39ede55 1/1 1/1 DeepTools toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 16:17:56 deeptools_plot_fingerprint False Installed bgruening 4ed32329e0ed 4ed32329e0ed 2/2 2/2 DeepTools toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 16:27:32 deeptools_plot_heatmap False Installed bgruening e4c7985d4585 e4c7985d4585 2/2 2/2 DeepTools toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 16:42:27 deeptools_plot_pca False Installed bgruening 443d9a9d6d11 443d9a9d6d11 2/2 2/2 DeepTools toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 16:53:01 deeptools_plot_profile False Installed bgruening 6662b1a8d326 6662b1a8d326 2/2 2/2 DeepTools toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 17:03:58 diann False Installed galaxyp ae4dc0c041f9 ae4dc0c041f9 2/2 2/2 Proteomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 17:37:42 edger False Installed iuc 0cb907a2a810 0cb907a2a810 12/12 12/12 RNA-seq toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 17:45:47 eggnog_mapper False Tests failed galaxyp d9c3016f7283 d9c3016f7283 Staging Testing 0/11 Annotation toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 17:47:53 encyclopedia_encyclopedia False Tests failed galaxyp eac99effe86f eac99effe86f Staging Testing 0/1 Proteomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 17:49:56 encyclopedia_searchtolib False Tests failed galaxyp fb192dd6658a fb192dd6658a Staging Testing 0/2 Proteomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 17:51:58 encyclopedia_walnut False Tests failed galaxyp 0d2e93e01e68 0d2e93e01e68 Staging Testing 0/1 Proteomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 18:00:45 featurecounts False Tests failed iuc f9d49f5cb597 f9d49f5cb597 Staging Testing 6/7 RNA-seq toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 18:15:14 humann False Tests failed iuc fc6c328c292f fc6c328c292f Staging Testing 2/8 Metagenomic Analysis toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 18:21:16 humann_regroup_table False Tests failed iuc e88b731dad59 e88b731dad59 Staging Testing 2/3 Metagenomic Analysis toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 18:41:15 humann_rename_table False Tests failed iuc 094ad9c068af 094ad9c068af Staging Testing 1/3 Metagenomic Analysis toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 18:42:14 keras_model_builder False Installed bgruening 66d7efc06000 66d7efc06000 Machine Learning toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 18:43:01 keras_model_config False Installed bgruening f22a9297440f f22a9297440f Machine Learning toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 18:43:49 keras_train_and_eval False Installed bgruening 818f9b69d8a0 818f9b69d8a0 Machine Learning toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 19:10:01 kraken2tax False Tests failed devteam 50bd98b3ae5a 50bd98b3ae5a Staging Testing 0/1 Metagenomic Analysis toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 19:25:30 merqury False Tests failed iuc 09c589057ee8 09c589057ee8 Staging Testing 3/6 Assembly toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 19:26:34 ml_visualization_ex False Installed bgruening 1588f9076e32 1588f9076e32 Machine Learning toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 19:27:31 model_prediction False Installed bgruening 9991c4ddde14 9991c4ddde14 Machine Learning toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 19:32:38 openms_decoydatabase False Tests failed galaxyp 25529df60a81 25529df60a81 Staging Testing 0/4 Proteomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 19:35:14 openms_targetedfileconverter False Tests failed galaxyp 9c70a651a53e 9c70a651a53e Staging Testing 0/20 Proteomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 19:37:23 openms_xmlvalidator False Tests failed galaxyp f036e8cf1a55 f036e8cf1a55 Staging Testing 0/1 Proteomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 19:56:11 rgrnastar False Tests failed iuc 79de45b5069b 79de45b5069b Staging Testing 14/18 RNA-seq toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 20:37:03 rna_starsolo False Tests failed iuc 5ef7ec16b04f 5ef7ec16b04f Staging Testing 12/13 Mapping toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 20:38:02 sklearn_build_pipeline False Installed bgruening 7442b94d6a1e 7442b94d6a1e Statistics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 20:38:51 sklearn_ensemble False Installed bgruening f3dfa4bdf87e f3dfa4bdf87e Machine Learning toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 20:39:42 sklearn_estimator_attributes False Installed bgruening 9fda0b82f419 9fda0b82f419 Statistics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 20:40:27 sklearn_generalized_linear False Installed bgruening 927586a18553 927586a18553 Machine Learning toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 20:41:19 sklearn_nn_classifier False Installed bgruening 7ae443e6217d 7ae443e6217d Statistics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 20:42:07 sklearn_numeric_clustering False Installed bgruening bb9fc9d46ea4 bb9fc9d46ea4 Statistics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 20:42:58 sklearn_searchcv False Installed bgruening 36e8d6d5d01b 36e8d6d5d01b Machine Learning toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 20:43:44 sklearn_svm_classifier False Installed bgruening 0630258dcf35 0630258dcf35 Machine Learning toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
Update 166 04/10/23 20:44:28 sklearn_to_categorical False Installed bgruening 61634a87efc7 61634a87efc7 Machine Learning toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_166/install_log.txt
72 changes: 36 additions & 36 deletions staging.usegalaxy.org.au/annotation.yml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -2,11 +2,11 @@ tools:
- name: abricate
owner: iuc
revisions:
- 78c75f134c16
- 3f3e247c053d
- 6e9aea89e388
- 4efdca267d51
- 78c75f134c16
- c2ef298da409
- 6e9aea89e388
- 3f3e247c053d
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: aegean_canongff3
Expand Down Expand Up @@ -36,38 +36,38 @@ tools:
- name: annotatemyids
owner: iuc
revisions:
- fe3ca740a485
- 44018dd6b447
- f29602ae449e
- 133f36c29579
- 1aae04680c4b
- 4f2967b27e67
- cd2480f35935
- 3e1f6f6d557e
- b5d8e5475247
- 3e1f6f6d557e
- 1aae04680c4b
- cd2480f35935
- fe3ca740a485
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: antismash
owner: bgruening
revisions:
- e78e25d3b4bd
- bc88856eddab
- e78e25d3b4bd
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: augustus_training
owner: bgruening
revisions:
- 6519ebe25019
- 7be22100e5e1
- dc027fa56d55
- 6519ebe25019
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: augustus
owner: bgruening
revisions:
- 09855551d713
- ca6d970d931c
- 28433faa6e42
- 09855551d713
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: bakta
Expand All @@ -79,9 +79,9 @@ tools:
- name: barrnap
owner: iuc
revisions:
- 7355bbf5e05f
- fe48aa4ccd5e
- 8fd427007e93
- fe48aa4ccd5e
- 7355bbf5e05f
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: chipseeker
Expand Down Expand Up @@ -118,41 +118,41 @@ tools:
- name: funannotate_annotate
owner: iuc
revisions:
- 9f2455341fac
- 14f588312c56
- 582fd74dc2a1
- 9f2455341fac
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_clean
owner: iuc
revisions:
- 30fb23d4c31c
- 73428a792541
- a230ea445788
- 30fb23d4c31c
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_compare
owner: iuc
revisions:
- 563a19373357
- 494f0bb4a993
- 30f08d74024f
- 494f0bb4a993
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_predict
owner: iuc
revisions:
- f31125bb85ea
- 2bba2ff070d9
- 7abc5f6dd595
- f31125bb85ea
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_sort
owner: iuc
revisions:
- 52af33194019
- d3af38b9c7e1
- b3cf4684e9c7
- 52af33194019
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: get_orfs_or_cdss
Expand All @@ -164,9 +164,9 @@ tools:
- name: gff_to_prot
owner: iuc
revisions:
- 2aea122fbd25
- 07d7991bf205
- 79261884facd
- 07d7991bf205
- 2aea122fbd25
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: goenrichment
Expand All @@ -178,9 +178,9 @@ tools:
- name: goseq
owner: iuc
revisions:
- 8b3e3657034e
- ef2ad746b589
- 602de62d995b
- 8b3e3657034e
- 43798b4caee0
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
Expand All @@ -206,8 +206,8 @@ tools:
- name: interproscan
owner: bgruening
revisions:
- 74810db257cc
- 98cafcbd2578
- 74810db257cc
- c55643c3d813
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
Expand All @@ -234,15 +234,15 @@ tools:
owner: iuc
revisions:
- d46d803ca6cc
- 3c1a01127868
- 370c210d9541
- 3c1a01127868
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: mitos2
owner: iuc
revisions:
- 624606f7c996
- 033755194fe9
- 624606f7c996
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: mob_suite
Expand All @@ -266,11 +266,11 @@ tools:
- name: prokka
owner: crs4
revisions:
- d643e3b03500
- bf68eb663bc3
- 8a22554cdde2
- a17498c603ec
- bf68eb663bc3
- d643e3b03500
- eaee459f3d69
- a17498c603ec
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: red
Expand All @@ -289,8 +289,8 @@ tools:
- name: repeatmodeler
owner: csbl
revisions:
- 8661b2607b7e
- 41bfbaf3c959
- 8661b2607b7e
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: rgi
Expand All @@ -309,19 +309,19 @@ tools:
owner: iuc
revisions:
- 8f92c2b26e6d
- 68693743661e
- cfcf33df7fc0
- 268d162b9c49
- 5a29ab10dba6
- 5b80f544c67f
- 5c7b70713fb5
- cfcf33df7fc0
- 5a29ab10dba6
- 68693743661e
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: snpsift
owner: iuc
revisions:
- 5fab4f81391d
- 2b3e65a4252f
- 5fab4f81391d
- 09d6806c609e
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
Expand All @@ -346,15 +346,15 @@ tools:
- name: tbprofiler
owner: iuc
revisions:
- 45083d070fb8
- 2c68b0c38785
- e1a9d6fd258d
- 200c378d85f3
- ba6f87115e13
- ac8250086ac3
- 45083d070fb8
- ba6f87115e13
- 37213cf56392
- 037a11682176
- 2c68b0c38785
- 809dfc93d593
- 200c378d85f3
- 037a11682176
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: transit_gumbel
Expand Down
Loading

0 comments on commit 2e01327

Please sign in to comment.