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Jenkins update build 174.
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galaxy-au-tools-jenkins-bot committed Nov 29, 2023
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26 changes: 26 additions & 0 deletions automated_tool_installation_log.tsv
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Expand Up @@ -6024,3 +6024,29 @@ Update 173 24/11/23 10:07:42 scanpy_plot False Installed iuc 9b0cdb8cf6be 9b0cdb
Update 173 24/11/23 10:18:19 scanpy_remove_confounders False Installed iuc 458e8f43a775 458e8f43a775 2/2 0/0 Single-cell toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 10:34:48 snpeff False Installed iuc 9473cd297a76 9473cd297a76 5/5 5/5 Annotation toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 173 24/11/23 11:01:46 sra_tools False Installed iuc e407b9da183a e407b9da183a 20/20 0/0 Get Data toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_173/install_log.txt
Update 174 29/11/23 11:49:09 anndata_import False Installed iuc 93dd15e13e6a 93dd15e13e6a 9/9 Single-cell toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_174/install_log.txt
Update 174 29/11/23 12:05:13 anndata_inspect False Tests failed iuc 6f0d0c784f09 6f0d0c784f09 Staging Testing 12/16 Single-cell toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_174/install_log.txt
Update 174 29/11/23 12:38:22 busco False Tests failed iuc 2a5b8b9936bf 2a5b8b9936bf Staging Testing 7/8 Assembly toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_174/install_log.txt
Update 174 29/11/23 12:42:17 cat_bins False Tests failed iuc 31853794ace2 31853794ace2 Staging Testing 0/4 Metagenomic Analysis toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_174/install_log.txt
Update 174 29/11/23 12:51:50 chipseeker False Tests failed rnateam 8bd92f2404dd 8bd92f2404dd Staging Testing 4/6 Annotation toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_174/install_log.txt
Update 174 29/11/23 13:41:03 edger False Installed iuc 5bf899c13979 5bf899c13979 13/13 13/13 RNA-seq toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_174/install_log.txt
Update 174 29/11/23 13:43:10 encyclopedia_encyclopedia False Tests failed galaxyp eac99effe86f eac99effe86f Staging Testing 0/1 Proteomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_174/install_log.txt
Update 174 29/11/23 13:45:15 encyclopedia_walnut False Tests failed galaxyp 0d2e93e01e68 0d2e93e01e68 Staging Testing 0/1 Proteomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_174/install_log.txt
Update 174 29/11/23 13:48:18 funannotate_annotate False Tests failed iuc 756376aeb1ae 756376aeb1ae Staging Testing 0/2 Annotation toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_174/install_log.txt
Update 174 29/11/23 13:51:48 funannotate_compare False Tests failed iuc e94187d661df e94187d661df Staging Testing 0/3 Annotation toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_174/install_log.txt
Update 174 29/11/23 14:41:37 hicexplorer_hicpca False Tests failed bgruening 77919cc3618e 77919cc3618e Production Testing 5/5 0/5 HiCExplorer toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_174/install_log.txt
Update 174 29/11/23 14:51:31 humann False Tests failed iuc fc6c328c292f fc6c328c292f Staging Testing 3/8 Metagenomic Analysis toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_174/install_log.txt
Update 174 29/11/23 14:55:55 humann_rename_table False Tests failed iuc 094ad9c068af 094ad9c068af Staging Testing 2/3 Metagenomic Analysis toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_174/install_log.txt
Update 174 29/11/23 15:14:34 megahit False Installed iuc a96f3ad4e0d8 a96f3ad4e0d8 4/4 4/4 Assembly toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_174/install_log.txt
Update 174 29/11/23 15:26:45 merqury False Tests failed iuc 09c589057ee8 09c589057ee8 Staging Testing 3/6 Assembly toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_174/install_log.txt
Update 174 29/11/23 16:16:59 ncbi_blast_plus False Tests failed devteam d999e774072a d999e774072a Staging Testing 41/67 Blast + toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_174/install_log.txt
Update 174 29/11/23 16:19:05 openms_targetedfileconverter False Tests failed galaxyp 9c70a651a53e 9c70a651a53e Staging Testing 0/20 Proteomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_174/install_log.txt
Update 174 29/11/23 16:21:13 openms_xmlvalidator False Tests failed galaxyp f036e8cf1a55 f036e8cf1a55 Staging Testing 0/1 Proteomics toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_174/install_log.txt
Update 174 29/11/23 16:32:03 samtools_calmd False Installed devteam c89806670ab9 c89806670ab9 2/2 2/2 SAM/BAM toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_174/install_log.txt
Update 174 29/11/23 18:01:30 samtools_fastx False Installed iuc 66e23b11feae 66e23b11feae 18/18 18/18 SAM/BAM toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_174/install_log.txt
Update 174 29/11/23 18:11:30 samtools_split False Tests failed devteam bd850490c7f1 bd850490c7f1 Production Testing 1/1 0/1 SAM/BAM toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_174/install_log.txt
Update 174 29/11/23 18:40:48 samtools_view False Tests failed iuc 6be888be75f9 6be888be75f9 Staging Testing 29/31 SAM/BAM toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_174/install_log.txt
Update 174 29/11/23 19:50:28 scanpy_cluster_reduce_dimension False Tests failed iuc 6acb08931836 6acb08931836 Production Testing 12/12 2/12 Single-cell toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_174/install_log.txt
Update 174 29/11/23 20:00:53 scanpy_filter False Tests failed iuc a03ff8633507 a03ff8633507 Staging Testing 7/8 Single-cell toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_174/install_log.txt
Update 174 29/11/23 20:06:28 scanpy_normalize False Tests failed iuc 94c19fb1281c 94c19fb1281c Staging Testing 2/4 Single-cell toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_174/install_log.txt
Update 174 29/11/23 21:06:03 split_file_to_collection False Installed bgruening baabc30154cd baabc30154cd 19/19 19/19 Collection Operations toolshed.g2.bx.psu.edu /var/lib/jenkins/galaxy_tool_automation/update_build_174/install_log.txt
94 changes: 47 additions & 47 deletions staging.gvl.org.au/annotation.yml
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Expand Up @@ -3,10 +3,10 @@ tools:
owner: iuc
revisions:
- c2ef298da409
- 78c75f134c16
- 4efdca267d51
- 6e9aea89e388
- 3f3e247c053d
- 78c75f134c16
- 6e9aea89e388
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: aegean_canongff3
Expand Down Expand Up @@ -36,15 +36,15 @@ tools:
- name: annotatemyids
owner: iuc
revisions:
- 1aae04680c4b
- b5d8e5475247
- cd2480f35935
- f29602ae449e
- 4f2967b27e67
- fe3ca740a485
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- b5d8e5475247
- 3e1f6f6d557e
- fe3ca740a485
- 1aae04680c4b
- 133f36c29579
- cd2480f35935
- f29602ae449e
- 44018dd6b447
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: antismash
Expand All @@ -57,17 +57,17 @@ tools:
- name: augustus_training
owner: bgruening
revisions:
- 7be22100e5e1
- 6519ebe25019
- dc027fa56d55
- 7be22100e5e1
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: augustus
owner: bgruening
revisions:
- 28433faa6e42
- ca6d970d931c
- 09855551d713
- ca6d970d931c
- 28433faa6e42
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: bakta
Expand All @@ -79,8 +79,8 @@ tools:
- name: barrnap
owner: iuc
revisions:
- 8fd427007e93
- fe48aa4ccd5e
- 8fd427007e93
- 7355bbf5e05f
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
Expand All @@ -100,8 +100,8 @@ tools:
owner: galaxyp
revisions:
- 9d1fbff733cf
- 63662ae295d6
- d9c3016f7283
- 63662ae295d6
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: exonerate
Expand All @@ -119,49 +119,49 @@ tools:
- name: funannotate_annotate
owner: iuc
revisions:
- 14f588312c56
- b6b5cd37f2a2
- 9f2455341fac
- 582fd74dc2a1
- 9f2455341fac
- 14f588312c56
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_clean
owner: iuc
revisions:
- a230ea445788
- 989f7c061f35
- 30fb23d4c31c
- 0ffe5be70caf
- 30fb23d4c31c
- 73428a792541
- 989f7c061f35
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_compare
owner: iuc
revisions:
- 563a19373357
- 5a5ae61da69c
- 494f0bb4a993
- 30f08d74024f
- 494f0bb4a993
- 5a5ae61da69c
- 563a19373357
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_predict
owner: iuc
revisions:
- 7abc5f6dd595
- 1bc5a03faf2e
- 2bba2ff070d9
- f31125bb85ea
- d6c7106b7b2e
- 1bc5a03faf2e
- 7abc5f6dd595
- f31125bb85ea
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: funannotate_sort
owner: iuc
revisions:
- b3cf4684e9c7
- 52af33194019
- 54961e026fe4
- d3af38b9c7e1
- 52af33194019
- 520e30695ec3
- b3cf4684e9c7
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: get_orfs_or_cdss
Expand All @@ -174,8 +174,8 @@ tools:
owner: iuc
revisions:
- 79261884facd
- 07d7991bf205
- 2aea122fbd25
- 07d7991bf205
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: goenrichment
Expand All @@ -187,9 +187,9 @@ tools:
- name: goseq
owner: iuc
revisions:
- 43798b4caee0
- 8b3e3657034e
- ef2ad746b589
- 43798b4caee0
- 602de62d995b
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
Expand All @@ -215,9 +215,9 @@ tools:
- name: interproscan
owner: bgruening
revisions:
- 74810db257cc
- c55643c3d813
- 98cafcbd2578
- 74810db257cc
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: jcvi_gff_stats
Expand All @@ -242,16 +242,16 @@ tools:
- name: maker
owner: iuc
revisions:
- 370c210d9541
- 3c1a01127868
- d46d803ca6cc
- 3c1a01127868
- 370c210d9541
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: mitos2
owner: iuc
revisions:
- 033755194fe9
- 624606f7c996
- 033755194fe9
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: mob_suite
Expand All @@ -275,11 +275,11 @@ tools:
- name: prokka
owner: crs4
revisions:
- bf68eb663bc3
- d643e3b03500
- a17498c603ec
- eaee459f3d69
- 8a22554cdde2
- eaee459f3d69
- bf68eb663bc3
- d643e3b03500
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: red
Expand All @@ -291,15 +291,15 @@ tools:
- name: repeat_masker
owner: bgruening
revisions:
- 3f987772e283
- ba6d2c32f797
- 3f987772e283
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: repeatmodeler
owner: csbl
revisions:
- 8661b2607b7e
- 41bfbaf3c959
- 8661b2607b7e
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: snap_training
Expand All @@ -311,22 +311,22 @@ tools:
- name: snpeff
owner: iuc
revisions:
- 68693743661e
- 5b80f544c67f
- 8f92c2b26e6d
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- 5a29ab10dba6
- 5c7b70713fb5
- 268d162b9c49
- cfcf33df7fc0
- 5a29ab10dba6
- 5b80f544c67f
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tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: snpsift
owner: iuc
revisions:
- 09d6806c609e
- 2b3e65a4252f
- 5fab4f81391d
- 2b3e65a4252f
- 09d6806c609e
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: snptools
Expand All @@ -351,15 +351,15 @@ tools:
- name: tbprofiler
owner: iuc
revisions:
- 2c68b0c38785
- ba6f87115e13
- e1a9d6fd258d
- 37213cf56392
- 037a11682176
- 200c378d85f3
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- 200c378d85f3
- 45083d070fb8
tool_panel_section_label: Annotation
tool_shed_url: toolshed.g2.bx.psu.edu
- name: transit_gumbel
Expand Down
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