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v2.2.1
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@mirimia mirimia released this 05 May 22:26
· 218 commits to master since this release
v2.2.1
ae10c74

NEW

  • The version of vast-tools used by each module is now printed when each process starts. In addition, a log file (VTS_LOG_commands.txt) is created in the output folder and registers version, date and main options used for each vast-tools run.

  • compare has a new option to remove Alt3 (ALTA) and Alt5 (ALTD) events with differential splice site usage if their overall impact in the transcript pool is predicted to be minor. Therefore, compare now requires that the alternative splice sites belong to an exon with a minimum inclusion level (~PSI) across ALL compared samples. This minimum PSI is set to 25 by default, and can be modified using the --min_ALT_use option. The equivalent value to previous versions is --min_ALT_use 0.

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