multiOmicsIntegration

Github Repository for multiOmics Integration project involving genomics, epigenomics and transcriptomics data

The datasets used in the manuscript can be downloaded from Zenodo Seal, Dibyendu, Das, Vivek, Goswami, Saptarshi, & De, Rajat. (2020). Datasets used for Multi-omics integration using Deep Learning and other state-of-the-art regression models (Version v1) [Data set]. Zenodo. http://doi.org/10.5281/zenodo.3712496

Currently there are 3 Python notebooks in this Github repository

1. Pre-processing.ipynb
2. DNAm_CNA_to_RNAseq.ipynb
3. DNAm_to_CNA.ipynb

The above notebooks can be used to run the codes used for multi-omics integration using Deep Learning and state-of-the-art regression methods.