BrainDynamics protocol

This protocol is based on our method: Varga, L. et al. Brain dynamics supported by a hierarchy of complex correlation patterns defining a robust functional architecture. Cell Systems, Volume 15, Issue 8, 770 - 786.e5 (2024). DOI: https://doi.org/10.1016/j.cels.2024.07.003

Requirements

• Python (tested for 3.12 and later versions)

  • igraph (0.11.6 or later)
  • pandas (2.2.2 or later)
  • scipy (1.14.0 or later)
  • matplotlib (3.9.2 or later)
  • cliffs_delta (1.0.0 or later)

• C/C++ compiler (e.g. gcc on Linux, Xcode Developer Tools for MacOS or Visual C++ Build Tools on Windows)

Setting up

1) Set up virtual python environment using python or conda.

For example:

python -m venv braindynamics_env

OR via Anaconda:

conda create --name braindynamics_env python=3.x

2) Install package from PyPi

 pip install braindynamics-starprotocol

Link to the PyPi project site for release history: https://pypi.org/project/braindynamics-starprotocol