Update the theme fo the enrichemnt and 'positives' plot

waldronlab · Sep 24, 2024 · 556742a · 556742a
1 parent b9247af
commit 556742a
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Showing 6 changed files with 4 additions and 4 deletions.
diff --git a/vignettes/articles/Figure1.pdf b/vignettes/articles/Figure1.pdf
diff --git a/vignettes/articles/Figure2.pdf b/vignettes/articles/Figure2.pdf
diff --git a/vignettes/articles/Figure3.pdf b/vignettes/articles/Figure3.pdf
diff --git a/vignettes/articles/Figure4.pdf b/vignettes/articles/Figure4.pdf
diff --git a/vignettes/articles/HMP_2012_16S_gingival_V35.Rmd b/vignettes/articles/HMP_2012_16S_gingival_V35.Rmd
@@ -315,7 +315,7 @@ enPlot <- enrichmentSummary |>
     labs(
         x = "DA method", y = "Number of DA taxa"
     ) +
-    theme_minimal() +
+    # theme_minimal() +
     theme(
         axis.text.x = element_text(angle = 45, hjust = 1),
         legend.position = "bottom"
@@ -389,7 +389,7 @@ posPlot <- positives |>
     scale_shape(name = "Normalization") +
     scale_linetype(name = "Normalization") +
     scale_color_manual(values = vec, name = "Base method") +
-    theme_minimal() +
+    # theme_minimal() +
     theme(legend.position = "bottom")
 ```
 

diff --git a/vignettes/articles/Ravel_2011_16S_BV.Rmd b/vignettes/articles/Ravel_2011_16S_BV.Rmd
@@ -299,7 +299,7 @@ enPlot <- enrichmentSummary |>
     labs(
         x = "DA method", y = "Number of DA taxa"
     ) +
-    theme_minimal() +
+    # theme_minimal() +
     theme(
         axis.text.x = element_text(angle = 45, hjust = 1),
         legend.position = "bottom"
@@ -412,7 +412,7 @@ posPlot <- positives |>
     scale_shape(name = "Normalization") +
     scale_linetype(name = "Normalization") +
     scale_color_manual(values = vec, name = "Base method") +
-    theme_minimal() +
+    # theme_minimal() +
     theme(legend.position = "bottom")
 # plots <- plot_positives(positives) |> 
 #     map( ~ {