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Update to BEDbase API 0.4.0
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jwokaty committed Apr 10, 2024
1 parent 07b13c9 commit ce960cf
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1 change: 1 addition & 0 deletions DESCRIPTION
Original file line number Diff line number Diff line change
Expand Up @@ -18,6 +18,7 @@ Imports:
R.utils,
stringr,
tibble,
tidyr,
tools,
utils
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34 changes: 16 additions & 18 deletions NAMESPACE
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Expand Up @@ -2,37 +2,35 @@

export(.BEDbase)
export(BEDbase)
export(bb_search)
export(download_file)
export(get_rec_type)
exportClasses(BEDbase)
exportMethods(bb_beds_in_bedset)
exportMethods(bb_count)
exportMethods(bb_genomes)
exportMethods(bb_list_beds)
exportMethods(bb_list_bedsets)
exportMethods(bb_metadata)
exportMethods(bb_records)
exportMethods(bb_metadata_classification)
exportMethods(bb_metadata_files)
exportMethods(bb_search)
exportMethods(bb_to_granges)
importFrom(AnVIL,Service)
importFrom(BiocFileCache,BiocFileCache)
importFrom(BiocFileCache,bfcadd)
importFrom(BiocFileCache,bfcdownload)
importFrom(BiocFileCache,bfcneedsupdate)
importFrom(BiocFileCache,bfcquery)
importFrom(BiocFileCache,bfcrpath)
importFrom(GenomicRanges,GRanges)
importFrom(IRanges,IRanges)
importFrom(dplyr,bind_rows)
importFrom(dplyr,filter)
importFrom(dplyr,mutate)
importFrom(httr,content)
importFrom(httr2,req_perform)
importFrom(httr2,request)
importFrom(httr2,resp_body_json)
importFrom(purrr,map_dfr)
importFrom(purrr,set_names)
importFrom(rlang,abort)
importFrom(purrr,map_depth)
importFrom(rlang,inform)
importFrom(stringr,regex)
importFrom(stringr,str_detect)
importFrom(stringr,str_split_1)
importFrom(tibble,as_tibble)
importFrom(rtracklayer,import)
importFrom(rtracklayer,import.bed)
importFrom(stringr,str_replace)
importFrom(tibble,tibble)
importFrom(tidyr,unnest)
importFrom(tidyr,unnest_wider)
importFrom(tools,R_user_dir)
importFrom(utils,URLencode)
importFrom(utils,download.file)
importFrom(utils,tail)
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