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GLMdenoise is a MATLAB toolbox for analyzing and denoising task-based fMRI data.
It is developed by Kendrick Kay ([email protected]).

To use the toolbox, add it to your MATLAB path:
  addpath(genpath('GLMdenoise'));

To try the toolbox on an example dataset, change to the GLMdenoise directory 
and then type:
  example1;
This script will download the example dataset (if it has not already been
downloaded) and will run the toolbox on the dataset.

For additional information, please visit:
  http://kendrickkay.net/GLMdenoise/

History of major code changes:
- 2013/05/12:
    Version 1.1.
    - The experimental design can now be specified in terms of onset times.
      This means that conditions do not have to exactly coincide with the TRs.
    - Fixed a bug concerning extraregressors.
    - Additional optional inputs, additional outputs, and additional figures.
    - All-zero regressors (e.g. encountered via bootstrapping) are now assigned zero weight.
- 2012/12/03 - Version 1.02. Various speed-ups and minor bug fixes.
- 2012/11/24 - Version 1.0.

Contents:
- example*.m - Example scripts
- exampledataset.mat - Example dataset
- GLMdenoisedata.m - The main top-level function that you probably want to call
- GLMestimatemodel.m - Another top-level function that you may call
- GLMpredictresponses.m - Another top-level function that you may call
- README - The file you are reading
- setup.m - A simple script that downloads the example dataset
            and adds GLMdenoise to the MATLAB path
- utilities - A directory containing various utility functions

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

Copyright (c) 2012, Kendrick Kay
All rights reserved.

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:

Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.

Redistributions in binary form must reproduce the above copyright notice, this
list of conditions and the following disclaimer in the documentation and/or
other materials provided with the distribution.

Neither the name of Stanford University nor the names of its contributors may be
used to endorse or promote products derived from this software without specific
prior written permission.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

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