Zoonomia

Sequence conservation at cCREs and TFBSs

UMAP analysis on cCREs and TFBSs

Gene Ontology (GO) enrichment analysis

Evolutionary conservation at transcription start sites

A convolution neural network for identifying transcription factor binding sites in TF ChIP-seq peaks

Benchmarking

A statistical method for identifying evolutionarily constrained transcription factor binding sites

Identification of bound TF motif instances (TFBSs)

Identification of evolutionarily constrained TF motif instances

Overlap of TFBSs with TEs in the human genome

Mammalian histone modification and TF ChIP-seq data processing

Classification of HNF4A, FOXA1, and CEBPA binding sites into enhancers, primed enhancers, and promoters in ten mammals

Cell-type-specific DNase cleavage patterns of TFBSs

CpG methylation of TFBSs

Partitioned LD score regression