Docker fixes

williamdlees · Jan 30, 2024 · 3925e8e · 3925e8e
1 parent 61c8b51
commit 3925e8e
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Showing 2 changed files with 4 additions and 1 deletion.
diff --git a/Dockerfile b/Dockerfile
@@ -13,10 +13,11 @@ RUN BLAST=2.15.0 \
 # Install Digger
 RUN \
   apt-get update && \
-  apt-get -y --no-install-recommends install apt-utils && \
+  apt-get -y --no-install-recommends install apt-utils dos2unix && \
   apt-get -y install vim && \
   apt-get -y install git && \  
   git clone "https://github.com/williamdlees/digger" /digger && \
   chmod +x /digger/run_docker_tests && \
+  mkdir /data && \
   pip install receptor-digger
 
diff --git a/run_docker_tests b/run_docker_tests
@@ -16,6 +16,8 @@ if [ ! -f "IMGT000035.csv" ]; then
 	exit 1
 fi
 
+dos2unix IMGT000035.csv
+dos2unix model_IMGT000035.csv
 diff model_IMGT000035.csv IMGT000035.csv
 
 rv=$?
-Original file line number
+Diff line change
@@ Expand Up / @@ -16,6 +16,8 @@ if [ ! -f "IMGT000035.csv" ]; then @@
     	exit 1
     fi
+    dos2unix IMGT000035.csv
+    dos2unix model_IMGT000035.csv
     diff model_IMGT000035.csv IMGT000035.csv
     rv=$?
@@ Expand Down @@