Skip to content

v0.1.2 (BUGGY – DO NOT USE!)

Pre-release
Pre-release
Compare
Choose a tag to compare
@yatisht yatisht released this 27 Oct 18:53
· 1822 commits to master since this release
v0.1.2
98c2182
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.
  • Modified Fasta2UShER to use faToVcf resulting in substantial speedups. Bug fixes to Fasta2UShER.
  • Modified core data structures in UShER resulting in some speedups.
  • Added an experimental option --multiple-placements in UShER to create a new tree for each possibility of parsimony-optimal placement
  • Replaced collapse-final-tree with collapse-tree
  • Added a note in README about mutation-annotated tree protobuf shared via UCSC for public SARS-CoV-2 sequences
Assets 2
Loading