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1. nf-germline nf-germline Public

   sentieon dnaseq/scope nextflow for germline NGS sequencing data(WGS/WES/panel)

2. nf-fpqc nf-fpqc Public

   fastq files qc processes

   Nextflow

3. nf-somatic nf-somatic Public

   sentieon TNseq/scope

4. nf-cohort nf-cohort Public

   sentieon GVCFtyper, combines gvcfs and performs genotyping, generates cohort vcf

5. nf-lowpass nf-lowpass Public

   lowpass WGS pipeline, use sentieon and GLIMPSE1 and GLIMPSE2

6. nf-benchmark nf-benchmark Public

   sentieon simple benchmark workflow, in nextflow