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Update README.md
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yunguan-wang authored Feb 9, 2022
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Expand Up @@ -7,11 +7,6 @@ Spatial Transcriptomics (ST) techniques provide gene expression close to or even
## Graphical abstract
<img src="https://github.com/yunguan-wang/SPROD/blob/master/img/model.png" height="500" width="500">

## Requirement
R >= 4.0.2, Rcpp, distances, dplyr.

Python >= 3.7, pandas, scikit-image, numpy, scipy, scikit-learn, tables.

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@ice4prince

ice4prince Feb 11, 2022

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Isn't this part still necessary? No where else mentioned the required modules of python.


## Installation
We strongly recommend using a python virtual env to manage the installation of this algorithm. To do this simply run:

Expand All @@ -25,7 +20,9 @@ git clone [repo_path]
cd [path/to/sprod]
pip install .
```
After this, install R >= 4.0.2 and the requred R packages. (If you don't already have those in your system.)
Sprod contains scripts written in R and C++, and thus please make sure you have the following dependencies in your system.

R >= 4.0.2, Rcpp, distances, dplyr.

The total installation time is around 10 mintunes. If error occuors please upgrade pip and try again.

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