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1. StrainEvolve_TemporalNMF StrainEvolve_TemporalNMF Public

   Use Temporal Non-negative Matrix factorization to study strain evolution

   Jupyter Notebook

2. MixtureDetection_KNN MixtureDetection_KNN Public

   Identify WGS samples infected with multiple strains of slow evolving pathogens

   R

3. WASP WASP Public

   WASP: A Workflow for Antibody Sequencing Profiling

   Jupyter Notebook

4. RNA-seq-InfluenzaNP-CD8-T-cells RNA-seq-InfluenzaNP-CD8-T-cells Public

   Jupyter Notebook

5. GISAID_metadata_explorer GISAID_metadata_explorer Public

   HTML

6. ggcovid ggcovid Public

   visualizations for BCFB SARS-covid-2 sequencing pipelines

   HTML