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start extracting a cellranger-only configuration subset #553

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wants to merge 26 commits into from
Closed

start extracting a cellranger-only configuration subset #553

wants to merge 26 commits into from

Commits on Apr 23, 2024

  1. Start extracting cellranger-related args.

    @macklin-10x
    macklin-10x committed Apr 23, 2024
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  2. Update usage of cellranger opts.

    @macklin-10x
    macklin-10x committed Apr 23, 2024
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  3. Remove the dead NO_KILL feature.

    @macklin-10x
    macklin-10x committed Apr 23, 2024
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  4. Clean up NOPAGER and NOPRETTY.

    @macklin-10x
    macklin-10x committed Apr 23, 2024
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  5. Move pager into enclone.

    @macklin-10x
    macklin-10x committed Apr 23, 2024
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  6. Scope NOPAGER to just the setup method.

    @macklin-10x
    macklin-10x committed Apr 23, 2024
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  7. Remove dead comment.

    @macklin-10x
    macklin-10x committed Apr 23, 2024
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  8. Move NUMI into cr_opts.

    @macklin-10x
    macklin-10x committed Apr 23, 2024
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  9. Move NUMI_RATIO into cr_opts.

    @macklin-10x
    macklin-10x committed Apr 23, 2024
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  10. Move REF into cr_opts.

    @macklin-10x
    macklin-10x committed Apr 23, 2024
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  11. Move PRE= into cr_opts.

    @macklin-10x
    macklin-10x committed Apr 23, 2024
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  12. Move NGRAPH_FILTER into cr_opts.

    @macklin-10x
    macklin-10x committed Apr 23, 2024
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  13. Move NWEAK_CHAINS into cr_opts.

    @macklin-10x
    macklin-10x committed Apr 23, 2024
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  14. Move NFOURSIE_KILL into cr_opts.

    @macklin-10x
    macklin-10x committed Apr 23, 2024
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  15. Move NDOUBLET into cr_opts.

    @macklin-10x
    macklin-10x committed Apr 23, 2024
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  16. Move NSIG into cr_opts.

    @macklin-10x
    macklin-10x committed Apr 23, 2024
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  17. Remove write to a never-read data structure.

    @macklin-10x
    macklin-10x committed Apr 23, 2024
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  18. Remove never-completed EXT functionality.

    @macklin-10x
    macklin-10x committed Apr 23, 2024
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  19. Delete dead visual help page.

    @macklin-10x
    macklin-10x committed Apr 23, 2024
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  20. Remove unused AG_DIST_FORMULA parameter.

    @macklin-10x
    macklin-10x committed Apr 23, 2024
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  21. Move nogray into clono_print_opts.

    @macklin-10x
    macklin-10x committed Apr 23, 2024
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  22. Move more print options into ClonoPrintOpt.

    @macklin-10x
    macklin-10x committed Apr 23, 2024
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  23. Remove population of never-read pathlist and last_modified.

    @macklin-10x
    macklin-10x committed Apr 23, 2024
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  24. Point back to feature branch.

    @macklin-10x
    macklin-10x committed Apr 23, 2024
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  25. Update enclone_ranger.

    @macklin-10x
    macklin-10x committed Apr 23, 2024
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  26. Update enclone_ranger.

    @macklin-10x
    macklin-10x committed Apr 23, 2024
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