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start extracting a cellranger-only configuration subset #553

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start extracting a cellranger-only configuration subset #553

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aef4355
Start extracting cellranger-related args.
macklin-10x Apr 5, 2024
07fb98a
Update usage of cellranger opts.
macklin-10x Apr 7, 2024
bfa4487
Remove the dead NO_KILL feature.
macklin-10x Apr 7, 2024
b53b2bd
Clean up NOPAGER and NOPRETTY.
macklin-10x Apr 7, 2024
8d7fe72
Move pager into enclone.
macklin-10x Apr 7, 2024
a57ac1b
Scope NOPAGER to just the setup method.
macklin-10x Apr 7, 2024
65921fa
Remove dead comment.
macklin-10x Apr 7, 2024
bb9279b
Move NUMI into cr_opts.
macklin-10x Apr 16, 2024
bdd42e6
Move NUMI_RATIO into cr_opts.
macklin-10x Apr 16, 2024
e19d294
Move REF into cr_opts.
macklin-10x Apr 16, 2024
b6a4af2
Move PRE= into cr_opts.
macklin-10x Apr 16, 2024
5ca1d26
Move NGRAPH_FILTER into cr_opts.
macklin-10x Apr 17, 2024
6bbc891
Move NWEAK_CHAINS into cr_opts.
macklin-10x Apr 17, 2024
6dd696b
Move NFOURSIE_KILL into cr_opts.
macklin-10x Apr 17, 2024
cf0b429
Move NDOUBLET into cr_opts.
macklin-10x Apr 17, 2024
5d20074
Move NSIG into cr_opts.
macklin-10x Apr 17, 2024
04ad3c1
Remove write to a never-read data structure.
macklin-10x Apr 18, 2024
594f435
Remove never-completed EXT functionality.
macklin-10x Apr 18, 2024
b1f09c4
Delete dead visual help page.
macklin-10x Apr 18, 2024
38ea815
Remove unused AG_DIST_FORMULA parameter.
macklin-10x Apr 18, 2024
f2d886b
Move nogray into clono_print_opts.
macklin-10x Apr 18, 2024
3853d8e
Move more print options into ClonoPrintOpt.
macklin-10x Apr 18, 2024
5de38bf
Remove population of never-read pathlist and last_modified.
macklin-10x Apr 18, 2024
c3c63ae
Point back to feature branch.
macklin-10x Apr 18, 2024
d6e4bf6
Update enclone_ranger.
macklin-10x Apr 18, 2024
a6a7e5b
Update enclone_ranger.
macklin-10x Apr 23, 2024
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81 changes: 49 additions & 32 deletions Cargo.lock
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