Code

Feat smartspim zarr compression#2

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Merged

camilolaiton merged 9 commits intomainAllenNeuralDynamics/aind-smartspim-data-transformation:mainfrom feat-smartspim-zarr-compressionAllenNeuralDynamics/aind-smartspim-data-transformation:feat-smartspim-zarr-compressionCopy head branch name to clipboardMay 30, 2024

+2,900-2

Commits

Commits on May 29, 2024

• updating image data transformations to convert from pngs to zarr

  camilolaiton

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  de3202c

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• updating singularity container to use dask mpi

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Commits on May 30, 2024

• adding dask utilities to create a slurm cluster if using the HPC

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• updating writer

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• removing SPIM folder from compression output

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• adding OMEZarr extension

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• updating input and output path

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• organizing compression utilities

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• updating docs and removing hardcoded paths

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