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[RFC]: Add functions guess_parse and guess_alphabet #292

Merged
merged 7 commits into from
Oct 22, 2024
Merged

[RFC]: Add functions guess_parse and guess_alphabet #292

merged 7 commits into from
Oct 22, 2024

Commits on Oct 22, 2024

  1. Add functions guess_parse and guess_alphabet 

    It's possible we might want a real API at some point to detect compatible
alphabets for a given input, but it's not trivial:
* What do we do about user-defined alphabets?
* Can we accept parsing the whole sequence twice - once to detect the alphabet,
  and once to construct the sequence?
* Might there be some downstream problems caused by giving the users functions
  to create type instability in their packages?
    @jakobnissen
    jakobnissen committed Oct 22, 2024
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  2. Fixup: Tests

    @jakobnissen
    jakobnissen committed Oct 22, 2024
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  3. Fixup: Test with AbstractString

    @jakobnissen
    jakobnissen committed Oct 22, 2024
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  4. Fixup: Do not copy AbstractString

    @jakobnissen
    jakobnissen committed Oct 22, 2024
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  5. Rename guess_parse to bioseq

    @jakobnissen
    jakobnissen committed Oct 22, 2024
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  6. Fix typo

    @jakobnissen
    jakobnissen committed Oct 22, 2024
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  7. Update changelog etc

    @jakobnissen
    jakobnissen committed Oct 22, 2024
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