3.9

What's Changed

• Ensure chrX and X are treated equally by @fellen31 in #135
• Add GitHub Actions workflows for PyPI and CHANGELOG by @fellen31 in #136
• Add parameters for penalty and threshold by @Jakob37 in #138
• Update readme by @dnil in #140
• Bump version to 3.9 by @dnil in #139

New Contributors

• @Jakob37 made their first contribution in #138
• @dnil made their first contribution in #140

Full Changelog: 3.8.3...3.9

3.8.3

What's Changed

• Fix unstable variants in models output by @fellen31 in #134

New Contributors

• @fellen31 made their first contribution in #134

Full Changelog: 3.8.2...3.8.3

3.8.2

What's Changed

• setup.py: Lockdown genmod, limit compatibility to python v3.8 by @torbjorgen in #120
• Export Rankscore as Float Type by @torbjorgen in #122
• setup.py: Set version 3.8.2 by @torbjorgen in #123

Full Changelog: 3.8.1...3.8.2

3.8.1

What's Changed

• setup py uplift requirements by @torbjorgen in #117
• setup.py: Set version 3.8.1 by @torbjorgen in #118

Full Changelog: 3.8.0...3.8.1

3.8.0

What's Changed

• Rankscore normalization by @torbjorgen in #108
• CHANGELOG, setup.py changes for v3.8.0 by @torbjorgen in #114

Full Changelog: 3.7.4...3.8.0

3.7.4

What's Changed

• set abstract_sockets_supported to False by @ramprasadn in #111

New Contributors

• @ramprasadn made their first contribution in #111

Full Changelog: 3.7.3...3.7.4

Updates click dependency

Use click < 7.0

Version 2.0

• More modular for easier maintenance
• Improvements to scorer

Split Multialleleic Calls

• genmod can now split multi alleleic calls. Use -split/--split_variants flag.
• use -p/--processes to manually decide the number of processes to be used for annotation

Annotates multiple families

The annotattion is now based on which family that follows an inheritance pattern, not only which variant.
Annotation now looks like:

• GeneticModels=fam_id_1:AR_hom,fam_id_2:AR_hom|AR_hom_dn
• Compounds=fam_id_1:1_2456_A_C,fam_id_2:1_24563_A_C|1_23564_C_T