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23 Open 5 Closed
23 Open 5 Closed
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Issues list

Ensure consistency of multiple test correction methods
#50 opened Sep 12, 2024 by adamklie
Get a demo dashboard for TeloHAEC on a server and shared dashboard
#49 opened Sep 10, 2024 by adamklie 2024 Gene Program Jamboree
@adamklie @aron0093
Rerun Endothelial evaluation pipeline after update evaluations
#48 opened Sep 10, 2024 by adamklie 2024 Gene Program Jamboree
@aron0093
Fix: categorical association dataframe output bug Something isn't working dashboard enhancement New feature or request evaluations
#46 opened Sep 9, 2024 by aron0093 2024 Gene Program Jamboree
@adamklie @aron0093
3
Replace pymemesuite FIMO implementation with tangermeme enhancement New feature or request evaluations
#45 opened Sep 6, 2024 by adamklie 2024 Gene Program Jamboree
@adamklie @aron0093
Rerun iPSC_EC evaluation pipeline after update enhancement New feature or request evaluations
#44 opened Sep 6, 2024 by adamklie
1 of 5 tasks
2024 Gene Program Jamboree
@adamklie
Add Topyic inference in examples/inference/iPSC_EC/Topyfic documentation Improvements or additions to documentation
#43 opened Sep 6, 2024 by adamklie 2024 Gene Program Jamboree
@nargesr
Add cNMF inference code to examples/inference/iPSC_EC/cNMF documentation Improvements or additions to documentation
#42 opened Sep 6, 2024 by adamklie 2024 Gene Program Jamboree
@aron0093
Code maintenance and good practices enhancement New feature or request
#41 opened Sep 5, 2024 by aron0093
Add an evaluation for model robustness discussion enhancement New feature or request
#36 opened Sep 5, 2024 by aron0093
Expose motif match significance threshold to users for motif enrichment enhancement New feature or request
#34 opened Sep 5, 2024 by aron0093 2024 Gene Program Jamboree
@adamklie @aron0093
1
Add support for perturbation association tests stratified per categorical level enhancement New feature or request evaluations
#33 opened Sep 5, 2024 by aron0093 2024 Gene Program Jamboree
@aron0093
2
Calibration of association tests dashboard enhancement New feature or request
#32 opened Sep 5, 2024 by aron0093
@aron0093
General procedure to assess goodness of fit rather than explained variance ratio. discussion enhancement New feature or request
#31 opened Sep 5, 2024 by aron0093
Update gene set enrichment functionality enhancement New feature or request evaluations
#29 opened Aug 22, 2024 by adamklie
3 of 4 tasks
2024 Gene Program Jamboree
@adamklie
3
GSEA plot for individual program / term enrichment dashboard discussion enhancement New feature or request
#28 opened Aug 21, 2024 by adamklie
Align dashboard with config from evaluation pipeline dashboard enhancement New feature or request
#27 opened Aug 21, 2024 by adamklie 2024 Gene Program Jamboree
@adamklie
Trait enrichment results should be processed in evaluations enhancement New feature or request evaluations
#26 opened Aug 21, 2024 by adamklie 2024 Gene Program Jamboree
@adamklie
1
Structure plot dashboard discussion enhancement New feature or request
#24 opened Aug 21, 2024 by adamklie
How are we handling promoter vs enhancer motif outputs from evaluation? dashboard enhancement New feature or request question Further information is requested
#21 opened Aug 21, 2024 by adamklie 2024 Gene Program Jamboree
@aron0093
4
Adding package versions to outputs from evaluation and (potentially) inference enhancement New feature or request
#20 opened Aug 21, 2024 by adamklie 2024 Gene Program Jamboree
@adamklie
Should we deprecate all the GRN stuff for now? discussion
#19 opened Aug 21, 2024 by adamklie
3 tasks done
2024 Gene Program Jamboree
@adamklie
2
Update README to reflect current state of the evaluations offered documentation Improvements or additions to documentation
#18 opened Aug 21, 2024 by adamklie
1 of 2 tasks
2024 Gene Program Jamboree
@adamklie @aron0093
ProTip! Exclude everything labeled bug with -label:bug.