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Simulation by RB Smith for evaluating the number of fathers in black soldier flies

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Simulating Multiple Paternity in Black Soldier Flies

RB Smith's 2023 Summer MSc Project

This code creates a simulation that models experiments for detecting multiple paternity in Black Soldier Fly clutches. The scripts MP_DetectionPower.R and PoolSequencing_MPDetection.R are complete, with explanations and instructions on using them in the scripts' comments. The former simulates an individual sequencing method, while the latter simulates a pool sequencing method. The rest are incomplete scripts committed to the repo while building the simulation.

Files with the prefix "_OLD" are interim scripts created during simulation development.

Files with the prefix "_COMP" are composite scripts containing all the code used to generate the data and figures in my MSc report - these scripts were divided into smaller chunks to run on the Eddie servers.

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Simulation by RB Smith for evaluating the number of fathers in black soldier flies

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