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Releases: KarchinLab/open-cravat

2.9.1

01 Oct 21:46
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  • Minor bugfix for public site only

2.9.0

26 Sep 22:38
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  • Add hgvs and dbsnp example inputs
  • Provide better example inputs on Single Variant Report
  • Improve oc new example-input command to support multiple input types
  • Improve submit page text input box UI

2.8.0

26 Aug 16:48
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  • Opt-in collection of local user emails for collecting better usage metrics
  • Fix bug that was preventing module panels from displaying on submit page
  • Add pandas as a dependency

2.7.3

18 Jun 19:46
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  • Import jobs run in the command line into the gui by clicking the "Import Job" button below the jobs table to add a sqlite file
  • Create a github discussion post to suggest new annotators directly from the store tab

2.7.1

03 Jun 16:54
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  • Discuss OpenCRAVAT features and get help by clicking the ? icon in the top bar
  • Improve top bar look and feel
  • Move button to download database to the report section

2.6.1

15 May 18:12
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  • Bioconda is only required if using oc vcfanno
  • Add HGVS input example to GUI
  • Layout beautification for submit form

2.6.0

24 Apr 13:55
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  • Filter vcf files on Genotype fields and variant call information such as zygosity, VAF, and read depth. Filters can include complex boolean logic, and can be used with annotation data.
  • Directly annotate large, many-sample VCFs using oc vcfanno. A new vcf is created with OC_XYZ fields in the INFO column. Efficiently uses many threads to process genome-scale input.
  • Python 3.12 compatibility
  • View errors affecting specific variants from the jobs table in the GUI
  • Fixes to checking for and installing annotator updates from the GUI
  • Improved config file handling for converters

2.5.0

26 Feb 16:42
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  • Refactor submit page javascript to use modules
  • Add end-to-end testing
  • Improve example input files: add more variants, GUI examples contain same variants and cmdline example
  • Exceptions in annotator setup no longer prevent other annotators from running
  • Jobs in GUI can still be opened after changing path of jobs directory
  • Change settings icon to gear from hamburger
  • Add link to docs in header (? icon)

2.4.2

03 Oct 17:18
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  • Fix to summary widgets. They will no longer use the last run filter when reloading the job without a filter selected.
  • On the submit page, the annotate button is not fixed to the bottom of the page.
  • Restrict aiohttp version to <4.0.0 in anticipation of changes to the aiohttp api

2.4.1

10 Aug 17:44
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  • Add annotation for Exon Number and End Position in mapper
  • Fix bug that occurred when using oc module install for a module that was already installed