extension of earlier cpm fix

LUMC · Feb 26, 2021 · 85a3bfb · 85a3bfb
1 parent 91bd8d3
commit 85a3bfb
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/inst/src/tabs/upload/svr_upload.R b/inst/src/tabs/upload/svr_upload.R
@@ -246,7 +246,7 @@ get_raw_dge <- reactive({
                  samples = colData(se),
                  genes = rowData(se))
   dge <- dge[rowSums(abs(dge$counts)) > 1,]
-  dge$counts <- cpm(dge, log = TRUE)
+  dge$counts <- cpm(dge, log = TRUE, prior.count = 1)
   dge
 })