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* Add openmmdl to the registry
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# Required entries | ||
## str: name of the project (the respository name) | ||
project_name: OpenMMDL | ||
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## List(str): a link to the authors file (preferred) or a list of authors | ||
authors: | ||
- https://github.com/wolberlab/OpenMMDL/blob/main/AUTHORS.md | ||
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## List(str): a list of maintainers | ||
## Please note these _must_ be GitHub handles | ||
## The maintainers will be tagged in issues if their MDAKit is failing. | ||
maintainers: | ||
- talagayev | ||
- NDoering99 | ||
- xixichennn | ||
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## str: a free form description of the mdakit | ||
description: | ||
Interface to OpenMM for easy setup of molecular dynamic simulations of protein-ligand complexes and the analysis thereof | ||
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## List(str): a list of keywords which describe the mdakit | ||
keywords: | ||
- MD simulations | ||
- Protein-ligand analysis | ||
- flask-based webserver | ||
- visualization | ||
- openmm | ||
- rdkit | ||
- nglview | ||
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## str: the license the mdakit falls under | ||
## See https://spdx.org/licenses/ for valid license specifiers | ||
license: MIT | ||
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## str: the link to the project's code | ||
## Please note that this is not limited to GitHub! Can be Gitlab, etc.. | ||
project_home: https://github.com/wolberlab/OpenMMDL | ||
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## str: the link to the project's documentation | ||
documentation_home: http://openmmdl.readthedocs.io/ | ||
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## str: the type of documentation available [UserGuide, API, README] | ||
documentation_type: UserGuide + API + README | ||
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#------------------------------------------------------------ | ||
# Optional entries | ||
#------------------------------------------------------------ | ||
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install: | ||
- mamba install -c conda-forge openmmdl | ||
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## List(str): a list of commands to use when installing the mdakit from its | ||
## source code. | ||
src_install: | ||
- | | ||
mamba install -c conda-forge | ||
pip | ||
numpy | ||
plip | ||
requests>=2.28.1 | ||
mdtraj | ||
rdkit>=2022.03.5 | ||
pdbfixer | ||
openff-toolkit | ||
openmmforcefields | ||
cudatoolkit>=11.7.0 | ||
cuda-python>=11.7.1 | ||
mdanalysis>=2.3.0 | ||
flask>=2.2.2 | ||
cairosvg | ||
nglview | ||
numba>=0.59.1 | ||
jupyter | ||
- pip install git+https://github.com/wolberlab/OpenMMDL | ||
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test_dependencies: | ||
- mamba install pytest>=6.1.2 pytest-runner pytest-shutil>=1.7.0 | ||
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## str: the package name used to import the mdakit | ||
import_name: openmmdl | ||
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## str: a specification for the range of Python versions supported by this MDAKit | ||
python_requires: ">=3.10" | ||
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## str: a specification for the range of MDAnalysis versions supported by this MDAKit | ||
mdanalysis_requires: ">=2.3.0" | ||
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## List(str): a list of commands to use when attempting to run the MDAKit's tests | ||
run_tests: | ||
- git clone latest | ||
- pytest openmmdl/ | ||
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## str: the development status of the MDAKit | ||
## See https://pypi.org/classifiers/ for development status classifiers. | ||
development_status: "Development Status :: 4 - Beta" | ||
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## str: a link to the MDAKit's changelog | ||
changelog: https://github.com/wolberlab/OpenMMDL/blob/main/CHANGELOG.md |