Repositories list

• sda-cli

  Public
  User command line interface for the SDA

  Go

  •

  GNU Affero General Public License v3.0

  •1•5•45•4•Updated Nov 1, 2024Nov 1, 2024

• workshop-python

  Public
  Apache License 2.0

  •10•7•4•0•Updated Nov 1, 2024Nov 1, 2024

• workshop-ngsintro

  Public
  Workshop • Intro to Bioinformatics using NGS data • 5 days

  rnaseqvariant-callingunix-shell+ 2ngs-analysisbioinformatics

  HTML

  •

  GNU General Public License v3.0

  •6•13•0•0•Updated Nov 1, 2024Nov 1, 2024

• beacon-production-prototype

  Public
  Python

  •

  Apache License 2.0

  •2•0•0•4•Updated Nov 1, 2024Nov 1, 2024

• Containerized-Compute-Helm-Charts

  Public
  Fork for working on CC Helm charts

  Shell

  •1•0•0•0•Updated Nov 1, 2024Nov 1, 2024

• data-submission-documentation

  Public
  Documentation for data submissions from life science research in public repositories

  Python

  •0•3•0•1•Updated Oct 31, 2024Oct 31, 2024

• workshop-r

  Public
  Workshop • R Programming Foundations for Life Scientists • 5 days

  rr-programmingworkshop+ 1life-scientists

  CSS

  •

  GNU General Public License v3.0

  •10•7•0•0•Updated Oct 31, 2024Oct 31, 2024

• teaching_literature_club

  Public
  NBIS' teaching literature club

  clubmeetingteaching+ 2literaturenbis

  Mermaid

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Oct 30, 2024Oct 30, 2024

• vector-oligo-search

  Public
  Python

  •

  GNU General Public License v3.0

  •1•0•1•1•Updated Oct 30, 2024Oct 30, 2024

• module-versioning-dm-practices

  Public
  Ruby

  •

  Other

  •0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

• Earth-Biogenome-Project-pilot

  Public
  Assembly and Annotation workflows for analysing data in the Earth Biogenome Project pilot project.

  Nextflow

  •

  GNU General Public License v3.0

  •8•11•43•4•Updated Oct 29, 2024Oct 29, 2024

• workshop-scRNAseq-devel

  Public
  Single cell RNA sequencing analysis course

  HTML

  •99•0•0•0•Updated Oct 29, 2024Oct 29, 2024

• workshop-reproducible-research

  Public
  NBIS/Elixir course: Tools for Reproducible Research

  HTML

  •

  Creative Commons Attribution 4.0 International

  •33•57•0•0•Updated Oct 29, 2024Oct 29, 2024

• tissue-adherent-VMB

  Public
  HTML

  •0•1•0•1•Updated Oct 28, 2024Oct 28, 2024

• urdr

  Public
  Timelogging system of NBIS

  TypeScript

  •

  GNU Affero General Public License v3.0

  •1•0•52•15•Updated Oct 28, 2024Oct 28, 2024

• strobealign-evaluation

  Public
  Python

  •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

• course_chipseq

  Public
  HTML

  •4•2•0•0•Updated Oct 25, 2024Oct 25, 2024

• redmine_utils

  Public
  Various script used to manage Redmine.

  Python

  •0•0•0•0•Updated Oct 25, 2024Oct 25, 2024

• PLP_Design_Portal

  Public
  This repository contains a package to create padlock probes that target RNA directly and for developing a user-friendly.portal

  0•0•12•0•Updated Oct 22, 2024Oct 22, 2024

• bp-landing-pages

  Public
  Bigpicture project dataset landing page generator

  HTML

  •0•0•0•0•Updated Oct 21, 2024Oct 21, 2024

• workshop_omics_integration

  Public
  Workshop in omics integration and systems biology

  systems-biologyintegrative-omics

  HTML

  •

  GNU General Public License v3.0

  •35•69•10•1•Updated Oct 21, 2024Oct 21, 2024

• workshop-epigenomics-RTDs

  Public
  workshop website on readthedocs

  13•19•0•0•Updated Oct 21, 2024Oct 21, 2024

• encam

  Public
  Encyclopedia of Cancer Microenvironment

  TypeScript

  •2•2•3•12•Updated Oct 17, 2024Oct 17, 2024

• workshop-pgip-H24

  Public
  Population genomics in practice H24

  TeX

  •0•0•0•0•Updated Oct 15, 2024Oct 15, 2024

• sda-services-backup

  Public
  neic-sda

  Go

  •1•2•1•0•Updated Oct 10, 2024Oct 10, 2024

• sda-uppmax-integration

  Public
  Go

  •0•0•1•0•Updated Oct 10, 2024Oct 10, 2024

• workshop-mlbiostatistics

  Public
  HTML

  •8•15•0•0•Updated Oct 7, 2024Oct 7, 2024

• simpred

  Public
  SNV impact predictor

  Python

  •

  MIT License

  •3•1•1•0•Updated Oct 2, 2024Oct 2, 2024

• fungal-trans

  Public
  A Snakemake workflow for fungal metatranscriptomics

  Python

  •

  MIT License

  •3•4•1•0•Updated Oct 2, 2024Oct 2, 2024

• AGAT

  Public
  Another Gtf/Gff Analysis Toolkit

  toolkitperl-scriptsgff+ 4gtfagatstandardisationgff-format

  Perl

  •

  GNU General Public License v3.0

  •56•455•23•1•Updated Sep 27, 2024Sep 27, 2024