fix #448 long term issue related to bioperl parser( for GFF2 and GFF2.5) #627
Workflow file for this run
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# This is a basic workflow to help you get started with Actions | |
name: CI | |
# Controls when the action will run. | |
# Triggers the workflow on push or pull request events | |
on: [push, pull_request, workflow_dispatch] | |
# A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
jobs: | |
# This workflow contains a single job called "build" | |
build: | |
# The type of runner that the job will run on | |
runs-on: ubuntu-latest | |
#container: | |
# image: perl:5.30 | |
# Steps represent a sequence of tasks that will be executed as part of the job | |
steps: | |
- name: Install libdb-dev | |
run: sudo apt-get -y install libdb-dev | |
- name: Install R | |
run: sudo apt-get -y install r-base | |
# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
#- name: Checkout AGAT | |
- uses: actions/checkout@v2 | |
- name: Setup Perl | |
uses: shogo82148/actions-setup-perl@v1 | |
with: | |
perl-version: '5.30' | |
install-modules-with: cpanm | |
install-modules-args: --notest --force | |
install-modules: File::ShareDir::Install Devel::Cover::Report::Coveralls | |
- uses: webiny/[email protected] | |
id: post-run-command | |
if: ${{ failure() }} | |
with: | |
run: cat /home/runner/.cpanm/build.log | |
- name: install AGAT deps | |
run: cpanm --installdeps --notest --force . | |
- name: test | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
DEVEL_COVER_OPTIONS: "+ignore,^local/" | |
run: cover -test -report Coveralls |