Skip to content

Issues: NBISweden/Earth-Biogenome-Project-pilot

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

57 Open 35 Closed
57 Open 35 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Update Report to check against version 6.0 of ERGA assembly standards
#158 opened Jan 24, 2025 by mahesh-panchal
Implement checking purge_dups output for size and telomer motifs
#157 opened Jan 22, 2025 by MartinPippel
1
Protocol for troubleshooting in the absence of developers high priority High priority issues
#156 opened Jan 22, 2025 by mahesh-panchal
New Module: OrganPipe enhancement New feature or request
#154 opened Jan 17, 2025 by mahesh-panchal
New Module: Kun-Peng enhancement New feature or request
#153 opened Jan 16, 2025 by mahesh-panchal
Each compute environment should have a local version of the databases.
#152 opened Jan 16, 2025 by mahesh-panchal
error fetching mash screen database (on a plant and nac)
#150 opened Jan 15, 2025 by LucileSol
Scaffolding steps and curation steps are executed without HiC data
#149 opened Jan 15, 2025 by MartinPippel
Meryl count crashed on something todo with genome size although it is not an input. high priority High priority issues
#148 opened Jan 15, 2025 by MartinPippel
3
Probleme with MitoHifi
#145 opened Dec 16, 2024 by LucileSol
New Module: MicroFinder enhancement New feature or request
#144 opened Dec 13, 2024 by mahesh-panchal
New Module: Sylph enhancement New feature or request
#143 opened Dec 13, 2024 by mahesh-panchal
Add check to workflow for FCS to see if there's enough ramdisk space.
#142 opened Dec 12, 2024 by mahesh-panchal
Workflow crashes when hi-c read input uses dash before read2
#141 opened Dec 11, 2024 by mahesh-panchal
Add Citation CFF
#140 opened Dec 5, 2024 by mahesh-panchal
resource requested too high on Rackham
#138 opened Nov 8, 2024 by gbdias
9
FASTK large memory footprint on dardel compute cluster
#137 opened Nov 8, 2024 by MartinPippel
The pipeline creates 2 hifiasm output files
#136 opened Nov 8, 2024 by MartinPippel
Hifiasm: create alt contigs
#135 opened Nov 8, 2024 by MartinPippel
better discrimination between stage and step
#134 opened Nov 8, 2024 by MartinPippel
Clodius crashes when converting bedgraph into hitile files
#133 opened Nov 7, 2024 by MartinPippel
optimize PURGEDUPS_SPLITFA process
#98 opened May 6, 2024 by MartinPippel
1
Check if GOAT API is easier to parse out then GOAT cli
#92 opened Mar 8, 2024 by mahesh-panchal
Dot plots of putative mitogenomes vs final mitogenomes
#90 opened Mar 6, 2024 by mahesh-panchal
Automated codon usage table selection
#88 opened Mar 5, 2024 by mahesh-panchal
3
ProTip! Mix and match filters to narrow down what you’re looking for.