workshop-ngsintro-v2403

• Website
  • Upgraded to quarto 1.4
  • Removed lightbox extension
  • Updated custom lua meta shortcode
  • Preload google fonts in webpage header
  • Added 404
  • Custom title slide for revealjs
  • Added reveal logo extension
  • Updated css style and hero images
  • In schedule, youtube links open in new tab
• Updated docker image to quarto 1.4
• RNASeq
  • Corrections and updates to links and references
  • Updated versions in rnaseq lab
  • Reorganised some images for better PDF output
  • Code style formatting
• Removed $ from all linux labs
• Compressed PDFs

workshop-ngsintro-v2311

• Source documents used for Nov 2023 workshop in Uppsala
• Course website and materials built using Quarto
• Docker image updated to Quarto
• Reorganized directory structure
• TA hover popup labels added to Schedule
• Canvas processing disabled in github actions
• Canvas site changed to one page with whole github pages site embedded in it.
• Reservations removed from labs due to magnetic reservations

workshop-ngsintro-v2302

• Source documents used for Feb 2023 multi-site hybrid workshop
• Pipelines covered by Franziska Bonath / Maxime Garcia
• Nextflow pipeline added to RNA-Seq
• Data management added back to schedule
• Open session removed
• Youtube playlist released

workshop-ngsintro-v2209

• Source documents used for Sep 2022 workshop.

workshop-ngsintro-v2203

• Source documents used for Mar 2022 workshop.

workshop-ngsintro-v2111

• Source documents used for Nov 2021 workshop.
• Covid Online edition 😷
• Updated boxy, theme styles, colour, landing image, chunk.title
• Links on canvas version removed
• RNASeq slides simplified
• Leaflet disabled
• Precourse instructions updated, Syllabus split separate
• Variant calling lab: moved sbatch scripts to end
• Updated linux intro, uppmax intro, linux filetypes, linux advanced, qol slides
• Added admin resources page

workshop-ngsintro-v2105

• Source documents used for May 2021 workshop.
• Covid Online edition 😷
• Added parallel version without navigation for canvas

workshop-ngsintro-v2011

• Source documents used for Nov 2020 workshop.
• Covid Online edition 😷

workshop-ngsintro-v2005-snapshot

• Workshop was cancelled due to covid
• Variant calling part has changed significantly from previous version

workshop-ngsintro-v2001

Source documents used for Jan 2020 course in Uppsala.