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Move workshop to GitHub Pages #208

Move workshop to GitHub Pages

Move workshop to GitHub Pages #208

Triggered via pull request October 23, 2024 13:41
@fasteriusfasterius
synchronize #266
specky
Status Failure
Total duration 2m 43s
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setup.yml

on: pull_request
Matrix: test
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3 errors and 18 warnings
test (macos-latest, snakemake)
The process '/Users/runner/miniconda3/condabin/mamba' failed with exit code 1
test (macos-latest, nextflow)
The process '/Users/runner/miniconda3/condabin/mamba' failed with exit code 1
test (ubuntu-latest, snakemake)
Process completed with exit code 1.
test (macos-latest, snakemake)
/Users/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
test (macos-latest, snakemake)
/Users/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
test (macos-latest, snakemake)
PackagesNotFoundError: The following packages are not available from current channels: - subread Current channels: - https://conda.anaconda.org/conda-forge - https://conda.anaconda.org/bioconda - https://repo.anaconda.com/pkgs/main - https://repo.anaconda.com/pkgs/r To search for alternate channels that may provide the conda package you're looking for, navigate to https://anaconda.org and use the search bar at the top of the page.
test (ubuntu-latest, jupyter)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
test (ubuntu-latest, jupyter)
/home/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
test (macos-latest, nextflow)
/Users/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
test (macos-latest, nextflow)
/Users/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
test (macos-latest, nextflow)
PackagesNotFoundError: The following packages are not available from current channels: - subread Current channels: - https://conda.anaconda.org/conda-forge - https://conda.anaconda.org/bioconda - https://repo.anaconda.com/pkgs/main - https://repo.anaconda.com/pkgs/r To search for alternate channels that may provide the conda package you're looking for, navigate to https://anaconda.org and use the search bar at the top of the page.
test (ubuntu-latest, quarto)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
test (ubuntu-latest, quarto)
/home/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
test (ubuntu-latest, nextflow)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
test (ubuntu-latest, nextflow)
/home/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
test (macos-latest, jupyter)
/Users/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
test (macos-latest, jupyter)
/Users/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
test (macos-latest, quarto)
/Users/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
test (macos-latest, quarto)
/Users/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
test (ubuntu-latest, snakemake)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
test (ubuntu-latest, snakemake)
/home/runner/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)